BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZA03FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1695 1548 0.0
>3x_Contig1695
Length = 14630
Score = 1548 bits (781), Expect = 0.0
Identities = 819/828 (98%), Gaps = 3/828 (0%)
Strand = Plus / Minus
Query: 89 tttgaacctctactttaaaggtattggtatggatctgaaagatttgaatgggcaagtgga 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10989 tttgaacctctactttaaaggtattggtatggatctgaaagatttgaatgggcaagtgga 10930
Query: 149 aatatcgaattttgtacatgggaaattcaaggacgaggctaatgccttgaacgaaactgt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10929 aatatcgaattttgtacatgggaaattcaaggacgaggctaatgccttgaacgaaactgt 10870
Query: 209 gctaaaggttaaacagcagttcatgaaagaattggaagaaaaagagcttttgagttctaa 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10869 gctaaaggttaaacagcagttcatgaaagaattggaagaaaaagagcttttgagttctaa 10810
Query: 269 acattcagagttcttcgtgcaagatgttgatatattaaatttgttaccttcgagcaacaa 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10809 acattcagagttcttcgtgcaagatgttgatatattaaatttgttaccttcgagcaacaa 10750
Query: 329 atctaacaaatatgtgcccagttggttgccagaactaccgcctgatcatacgtacaaatt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10749 atctaacaaatatgtgcccagttggttgccagaactaccgcctgatcatacgtacaaatt 10690
Query: 389 tacctcgttgtacaagagacccattacagatgagaggctgatgaagaagaagttactaga 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10689 tacctcgttgtacaagagacccattacagatgagaggctgatgaagaagaagttactaga 10630
Query: 449 agaaggaaggctttcggaaaaggcattgttgaatatgcttagtcaagttgtcaatcagga 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10629 agaaggaaggctttcggaaaaggcattgttgaatatgcttagtcaagttgtcaatcagga 10570
Query: 509 cccactggtagcgctaaataaagatagcgaccagtctgccaacaatgctgccctttctga 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10569 cccactggtagcgctaaataaagatagcgaccagtctgccaacaatgctgccctttctga 10510
Query: 569 acatattaaagaaagtcagttagaaaccgatttaatctttgaccctcataaaaccatacc 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10509 acatattaaagaaagtcagttagaaaccgatttaatctttgaccctcataaaaccatacc 10450
Query: 629 tacagataaagaatggggtacaacaacggtccttcatggcatcgagtcattcaatctttc 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10449 tacagataaagaatggggtacaacaacggtccttcatggcatcgagtcattcaatctttc 10390
Query: 689 gccagtgaagaatttcaatgtgttagaatactgntagaagagagatgcaatagtaaaacg 748
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 10389 gccagtgaagaatttcaatgtgttagaatactgtaagaagagagatgcaatagtaaaacg 10330
Query: 749 aagggctgaaagggcagaaaaccaagtatcgaataagagacgtaacccattcatacgagg 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10329 aagggctgaaagggcagaaaaccaagtatcgaataagagacgtaacccattcatacgagg 10270
Query: 809 tgccatgatctgttcaccctacggtcaaaggagtaccaaaatcga-gaagtcagttgaaa 867
|||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||
Sbjct: 10269 tgccatgatctgttcaccctacggtcaagggagtacc-aaatcgaggaagtcagttgaaa 10211
Query: 868 atcaatttgaaacaatgctaaggcggtatttacttggggctgatagat 915
||||||| ||||||||||||||| ||| |||||||||||||||||||
Sbjct: 10210 atcaattgaaaacaatgctaaggc-gtagttacttggggctgatagat 10164
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6611
Number of Sequences: 1807
Number of extensions: 6611
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)