BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZA03RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1301 1645 0.0
>3x_Contig1301
Length = 6951
Score = 1645 bits (830), Expect = 0.0
Identities = 861/870 (98%), Gaps = 2/870 (0%)
Strand = Plus / Minus
Query: 47 atttggatactcatttttttaggaataatcatcaagaaattctaaatgtacacgcagata 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4669 atttggatactcatttttttaggaataatcatcaagaaattctaaatgtacacgcagata 4610
Query: 107 aaacatatcaccagttgaatctttcatcgaagcatttaatgagcaaaatcacaaatataa 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4609 aaacatatcaccagttgaatctttcatcgaagcatttaatgagcaaaatcacaaatataa 4550
Query: 167 tcagtgatcatgtcgaacaaaacagaacattattgatggatacattgaagactgccacca 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4549 tcagtgatcatgtcgaacaaaacagaacattattgatggatacattgaagactgccacca 4490
Query: 227 ccgaagtcattactcaagagatgtctcatttcgaaccagtcaggaaaacatgggaacagt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4489 ccgaagtcattactcaagagatgtctcatttcgaaccagtcaggaaaacatgggaacagt 4430
Query: 287 cattcaatcacattaatgtatgtgattctttgagcaataaattcaaagatgatacaacag 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4429 cattcaatcacattaatgtatgtgattctttgagcaataaattcaaagatgatacaacag 4370
Query: 347 aatctttgaatagcttgaaatctcatatggaaagtacagtacgtgaaagttctctaattg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4369 aatctttgaatagcttgaaatctcatatggaaagtacagtacgtgaaagttctctaattg 4310
Query: 407 cagacaagattaaagataatctttgtcatttccaagatagaaatgatatcgcaaacatga 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4309 cagacaagattaaagataatctttgtcatttccaagatagaaatgatatcgcaaacatga 4250
Query: 467 ctacaaacattaacggtactgtggatgatattaaaaacaagcatagtgttttacgtgatg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4249 ctacaaacattaacggtactgtggatgatattaaaaacaagcatagtgttttacgtgatg 4190
Query: 527 agttggaaaaaaatgtctcatttattcacgcctcaagtgaaggttttaaagctatagata 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4189 agttggaaaaaaatgtctcatttattcacgcctcaagtgaaggttttaaagctatagata 4130
Query: 587 gctctctgaaacgtataatgaatttccgtatgcccgaggggaaaacagaaactttagcag 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4129 gctctctgaaacgtataatgaatttccgtatgcccgaggggaaaacagaaactttagcag 4070
Query: 647 atgatttgataaagcatattgattcaagttctgtggccccagtcgcgtcttctgggaaaa 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4069 atgatttgataaagcatattgattcaagttctgtggccccagtcgcgtcttctgggaaaa 4010
Query: 707 cgccgttgagaccacttctcaaatctgaaacanagcagagatcactatcgaaatcagttt 766
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 4009 cgccgttgagaccacttctcaaatctgaaacaaagcagagatcactatcgaaatcagttt 3950
Query: 767 ctcctgcanaaagttcacatgccaccattataaactctccattanagaggaagtcatcag 826
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3949 ctcctgcaaaaagttcacatgccaccattataaactctccattaaagaggaagtcatcag 3890
Query: 827 actcaagattttttcctggggattagt-aaaaacaacggtaagtccaccaaaaattctnc 885
|||||||| |||||||| |||| |||| |||||||||||||||||||||||||||||| |
Sbjct: 3889 actcaagaatttttcct-gggaatagtaaaaaacaacggtaagtccaccaaaaattctcc 3831
Query: 886 tattagcatacgcctatcgctgcgttatat 915
||||||||||||||||||||||||| ||||
Sbjct: 3830 tattagcatacgcctatcgctgcgtcatat 3801
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7133
Number of Sequences: 1807
Number of extensions: 7133
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)