BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZA05FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1624 1334 0.0
>3x_Contig1624
Length = 12551
Score = 1334 bits (673), Expect = 0.0
Identities = 751/777 (96%)
Strand = Plus / Minus
Query: 87 tttcggtgaatctttccatacaactggtgaagaatttgtattgttccgattggagtgagc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11708 tttcggtgaatctttccatacaactggtgaagaatttgtattgttccgattggagtgagc 11649
Query: 147 ctgttttttctttttgaacttttctggtttgttgtcccttgctgtttctttattattgtt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11648 ctgttttttctttttgaacttttctggtttgttgtcccttgctgtttctttattattgtt 11589
Query: 207 ttgttacttcctctttttgttagtttccaaatcgaatctgaatctgatccaagcttttca 266
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11588 ttgttacttcctcaataggttagtttccaaatcgaatctgaatctgatccaagcttttca 11529
Query: 267 gattcattatttcaataaagaggttttagctttgaacaatcccagtccatagttgacaat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11528 gattcattatttcaataaagaggttttagctttgaacaatcccagtccatagttgacaat 11469
Query: 327 agtcgataggaaacatactaccaagagtatcgccagcggtgaagacattgctatcggtag 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11468 agtcgataggaaacatactaccaagagtatcgccagcggtgaagacattgctatcggtag 11409
Query: 387 agacagtgatagcagaaagcaagttgatcaagagatcctacgtcttgctcctaaaaagaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11408 agacagtgatagcagaaagcaagttgatcaagagatcctacgtcttgctcctaaaaagaa 11349
Query: 447 tcgcagagtttttttatactggaatcaagatctgttggtataactcttaattattgatct 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11348 tcgcagagtttttttatactggaatcaagatctgttggtataactcttaattattgatct 11289
Query: 507 cctgcagaactcattgggaaattggtaatagaatagttgactgagttgattgctaaagca 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11288 cctgcagaactcattgggaaattggtaatagaatagttgactgagttgattgctaaagca 11229
Query: 567 ggtactaaagaaagtgcaattgtctttctttccgatctcttctttttaacagaaactaaa 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11228 ggtactaaagaaagtgcaattgtctttctttccgatctcttctttttaacagaaactaaa 11169
Query: 627 ttaaagacaattctgtcaaagcattatgtcaaaggataaatatgattgaagcttgaaaaa 686
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 11168 ttaaagacaattctgtcaaagcattatgtcaaaggataaatatgatagaagcttgaaaaa 11109
Query: 687 cttgaacatgctaagaagaccagtgttaaacattgttactaatactactgaatttacttt 746
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||
Sbjct: 11108 cttgaacatgctaagaagaccagtgttaaacaatgttactaatactactgaatctacgtt 11049
Query: 747 cggtaaagtttttgagcaagctttattaagacttgcgaatatcaggacgaataatcttcc 806
|||||||||||| ||| ||| || |||||| ||||| ||||||||||||||||||
Sbjct: 11048 cggtaaagttttgaggcaggctaaatcaagactgcagaatagcaggacgaataatcttcc 10989
Query: 807 ccaggttaccgcaaacttgtatttgaacacaaaaccggccccttggaaagatgacat 863
||||| ||||||||||| ||||| ||||||||||||||| || | || |||||||||
Sbjct: 10988 ccagggtaccgcaaactcgtattcgaacacaaaaccggcaccattgagagatgacat 10932
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8451
Number of Sequences: 1807
Number of extensions: 8451
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)