BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZA05RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1386 1455 0.0
>3x_Contig1386
Length = 5452
Score = 1455 bits (734), Expect = 0.0
Identities = 783/797 (98%), Gaps = 3/797 (0%)
Strand = Plus / Minus
Query: 44 ctttggaagaagagaaggccatattggaacaagaaattaaagaagctcaagaacttcacc 103
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ctttggaagaagagaaggccagattggaacaagaaattaaagaagctcaagaacttcacc 738
Query: 104 aacaaaacgtctccaagatcgaaagtatcgacaacaaggagtacttacctaaggtcaatg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aacaaaacgtctccaagatcgaaagtatcgacaacaaggagtacttacctaaggtcaatg 678
Query: 164 aaattaataccgaaatttcttcactacttgcttcgttaggtttaattcaacattattttg 223
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 677 aaattaataccgaaatttcttcactacttgcttcgttaggtttaattcaacaagaaattg 618
Query: 224 ccaaccaaaaggtcgagttttctagtgttactaggagattggaggaagagcgtaaacaac 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ccaaccaaaaggtcgagttttctagtgttactaggagattggaggaagagcgtaaacaac 558
Query: 284 atgaagaacaattgctaaaagaaaaagaggaacgtgagcgtttagaaaaggagcgtttag 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 atgaagaacaattgctaaaagaaaaagaggaacgtgagcgtttagaaaaggagcgtttag 498
Query: 344 aaaagcaacgtaccgagtacgaaaagcaagctgaagaagctcgtttgaagcacgaagaag 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aaaagcaacgtaccgagtacgaaaagcaagctgaagaagctcgtttgaagcacgaagaag 438
Query: 404 agctggctaacctgaagcaaactcacgacgaggcgctgaaggaggcacagttgcaacgtg 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agctggctaacctgaagcaaactcacgacgaggcgctgaaggaggcacagttgcaacgtg 378
Query: 464 aagctgcggccaaacaacttgaagaagaacaacagagacgtgaacaagtagaacgtgaaa 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aagctgcggccaaacaacttgaagaagaacaacagagacgtgaacaagtagaacgtgaaa 318
Query: 524 gaactcgtctacaaggtgaaaaggctattgaagcacaacaacgaggtaatcccgaagaca 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gaactcgtctacaaggtgaaaaggctattgaagcacaacaacgaggtaatcccgaagaca 258
Query: 584 agagactggaagctgaacacgaagaaaagttgagaaggcaagcagaatctgccagtgcag 643
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 257 agagactggaagctgaacacgaagaaaagttgagaaggcaagcagaagctgccagtgcag 198
Query: 644 tcgaaaatgccctgaagagtagcaacaaaaaaacgaaagcagctgttccacctgcaaaca 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tcgaaaatgccctgaagagtagcaacaaaaaaacgaaagcagctgttccacctgcaaaca 138
Query: 704 ccacaaattcttctctatatgactacgaaaccgttgaagaagtcataactgttgattgaa 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 ccacaaattcttctctatatgactacgaaaccgttgaagaagtcataactgttgattgaa 78
Query: 764 taac-agagagatcttacaacgaa--tacatttaacattggactttgtaatttctaaaat 820
|||| | |||||||||| |||||| ||||| |||||||||||||||||||||||||||
Sbjct: 77 taacaaaagagatcttaaaacgaaataacattaaacattggactttgtaatttctaaaat 18
Query: 821 atgtcggttctaattta 837
|||||| ||||||||||
Sbjct: 17 atgtcgtttctaattta 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8356
Number of Sequences: 1807
Number of extensions: 8356
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)