BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZA06RM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1302 1612 0.0
3x_Contig1399 153 7e-37
>3x_Contig1302
Length = 5215
Score = 1612 bits (813), Expect = 0.0
Identities = 854/864 (98%), Gaps = 3/864 (0%)
Strand = Plus / Plus
Query: 41 gctttgttc-aacttttgaccctttttaatctccggatttttataaatttgacattgaca 99
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 gctttgttccaacttttgaccctttttaatctccggatttttataaatttgacattgaca 849
Query: 100 atagcttttaatgattaaaggtctttaaaaaaataacaaaagtgaaagatgaccaaaaac 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 atagcttttaatgattaaaggtctttaaaaaaataacaaaagtgaaagatgaccaaaaac 909
Query: 160 ggacagagaacagaataatcataaaaccattatatatactatatgcgctcccttttt-tt 218
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 910 ggacagagaacagaataatcataaaaccattatatatactatatgcgctccccctacatt 969
Query: 219 atacattttcgacattgtcatccgacgttgttactagtagggagaaagatgctgtataat 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970 atacattttcgacattgtcatccgacgttgttactagtagggagaaagatgctgtataat 1029
Query: 279 aatataaaaaagaatgttataacagtagatatagatgttaaaaagatactatgttagttg 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1030 aatataaaaaagaatgttataacagtagatatagatgttaaaaagatactatgttagttg 1089
Query: 339 caatccagcagaactagataaatatcgttaaaaactttcatcaattcatgatatgtgatc 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1090 caatccagcagaactagataaatatcgttaaaaactttcatcaattcatgatatgtgatc 1149
Query: 399 attaactaaaaggccgaaggaataatatgggataagagattggaaggaaggaaaaaaaaa 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1150 attaactaaaaggccgaaggaataatatgggataagagattggaaggaaggaaaaaaaaa 1209
Query: 459 agataatatttttggcagtaactgtaaattataataacagactgatcttaccccaaatga 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1210 agataatatttttggcagtaactgtaaattataataacagactgatcttaccccaaatga 1269
Query: 519 cttatccgtctagttggaggtgtcaacaacgtatctacccaaaatcttaccttgttccat 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1270 cttatccgtctagttggaggtgtcaacaacgtatctacccaaaatcttaccttgttccat 1329
Query: 579 caattcgtaaacctttggtagttcggacaaaccaacaaccttgattggagagtggacgtg 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1330 caattcgtaaacctttggtagttcggacaaaccaacaaccttgattggagagtggacgtg 1389
Query: 639 accgttagcgaagaagttgatagcttctctggtgtcagctctgttaccgacgtaagaacc 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1390 accgttagcgaagaagttgatagcttctctggtgtcagctctgttaccgacgtaagaacc 1449
Query: 699 cttgatgttaatagacttaacgacgtgggagaagacttcggacttgatgacggcaccagc 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1450 cttgatgttaatagacttaacgacgtgggagaagacttcggacttgatgacggcaccagc 1509
Query: 759 tggcaaaccgaccaatacgacagtaccagttggtctgacgaattgagtggaagcgttcat 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1510 tggcaaaccgaccaatacgacagtaccagttggtctgacgaattgagtggaagcgttcat 1569
Query: 819 ggcagcttcagaaacagagacgttaatgacaccgtgtggaccaccgnntggtgatttctt 878
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1570 ggcagcttcagaaacagagacgttaatgacaccgtgtggaccaccg-ttggtgatttctt 1628
Query: 879 ggatttcaggcaccatgtccttgg 902
||||||||| |||||||||||||
Sbjct: 1629 ggatttcagcaaccatgtccttgg 1652
>3x_Contig1399
Length = 7157
Score = 153 bits (77), Expect = 7e-37
Identities = 182/217 (83%)
Strand = Plus / Minus
Query: 648 gaagaagttgatagcttctctggtgtcagctctgttaccgacgtaagaacccttgatgtt 707
|||||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gaagaagtcggtggcttctctggtgtcagctctgttaccgacgtaagaacccttgatgga 428
Query: 708 aatagacttaacgacgtgggagaagacttcggacttgatgacggcaccagctggcaaacc 767
|| |||||||||||||||||||||||||||||||||| | || |||||||||||||
Sbjct: 427 gatggacttaacgacgtgggagaagacttcggacttgacgtaagcgtcagctggcaaacc 368
Query: 768 gaccaatacgacagtaccagttggtctgacgaattgagtggaagcgttcatggcagcttc 827
|||||| || ||| ||| |||||||| ||| ||| || || | || ||||| ||
Sbjct: 367 gaccaagacaacaacaccggttggtctaacgtattcggtagacatggagatagcagcctc 308
Query: 828 agaaacagagacgttaatgacaccgtgtggaccaccg 864
|| || |||||||||||||||||||| |||||||||
Sbjct: 307 ggagacggagacgttaatgacaccgtgaggaccaccg 271
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9248
Number of Sequences: 1807
Number of extensions: 9248
Number of successful extensions: 108
Number of sequences better than 1.0e-20: 2
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)