BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZA07FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1676 1352 0.0
>3x_Contig1676
Length = 15800
Score = 1352 bits (682), Expect = 0.0
Identities = 771/791 (97%), Gaps = 8/791 (1%)
Strand = Plus / Plus
Query: 88 cttatttcttcaacacaattgataaaactgatc-ataattacctccatattcgtgacatt 146
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 5473 cttatttcttcaacacaattgataaaactgatccataattacctccatattcgtgacatt 5532
Query: 147 gttgtttatatctccaatgagagacactttgcagaagaactgtttggcaatcttgattta 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5533 gttgtttatatctccaatgagagacactttgcagaagaactgtttggcaatcttgattta 5592
Query: 207 cgcatctttactttgggcaacagaaactatacctttattcgttacatcactcttagttcc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5593 cgcatctttactttgggcaacagaaactatacctttattcgttacatcactcttagttcc 5652
Query: 267 tttattaattgttgttttcccagttttaaaggatacaacggatggacacatactaaaccc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5653 tttattaattgttgttttcccagttttaaaggatacaacggatggacacatactaaaccc 5712
Query: 327 aacagaatcttcccagtatattttgtccacaatgtggtctagtgtgattatgttattact 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5713 aacagaatcttcccagtatattttgtccacaatgtggtctagtgtgattatgttattact 5772
Query: 387 aggtggttttaccttggcagcagcactatctaaatataacattgctaaggttctatcaac 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5773 aggtggttttaccttggcagcagcactatctaaatataacattgctaaggttctatcaac 5832
Query: 447 tcacattttgtcgtctgcggggacaaacccaaagattattcttttgacaaatatgggtgt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5833 tcacattttgtcgtctgcggggacaaacccaaagattattcttttgacaaatatgggtgt 5892
Query: 507 ggctttgtttgcatcaatgtgggtatccaatgtagccgcgccggtattgtgttattccat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5893 ggctttgtttgcatcaatgtgggtatccaatgtagccgcgccggtattgtgttattccat 5952
Query: 567 tattcagccattattaag-actttgccctaa-gcagtacatttgcaaaatcattgatttt 624
|||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct: 5953 tattcagccattattaagaactttgcctaaaggcagtacatttgcaaaatcattgatttt 6012
Query: 625 aggtattgcattggcattcaatattggaggtatggcatcccctattgcttcccctc-aaa 683
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 6013 aggtattgcattggcatccaatattggaggtatggcatcccctattgcttcccctcaaaa 6072
Query: 684 catcatttcgattagtatgatggatccgccaccttcatggggcccaatggtttattgtat 743
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 6073 catcatttcgataggtatgatggatccgccaccttcatgggg-ccaatggtttattgtat 6131
Query: 744 catttactgtttgtgtcatttgtatcgttgncatttggnggtttactacttttgactttc 803
|||| |||||||||||||||||||||||| ||| ||| ||||||||||||||||||||
Sbjct: 6132 cattacctgtttgtgtcatttgtatcgttgtcatctggt-gtttactacttttgactttc 6190
Query: 804 ccttcgnacagcaatttgaaaattttgaaatatcatcccaatttcggatccattcactgt 863
||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 6191 cctccggacagcaatttgaaaattttgaaatatcat-ccaatttcggatccattcactg- 6248
Query: 864 tgcagcagtgg 874
|||||||||||
Sbjct: 6249 tgcagcagtgg 6259
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6312
Number of Sequences: 1807
Number of extensions: 6312
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)