BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZA07RM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1630 1465 0.0
>3x_Contig1630
Length = 14771
Score = 1465 bits (739), Expect = 0.0
Identities = 800/817 (97%), Gaps = 3/817 (0%)
Strand = Plus / Plus
Query: 44 cttttctctgagcagaattaggtttctttggcttcaataccatcactcttagcacaactc 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5369 cttttctctgagcagaattaggtttctttggcttcaataccatcactcttagcacaactc 5428
Query: 104 ctttacgaatcgggcatacctccaaatctggggattcagtgatcttcttacggccaggag 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5429 ctttacgaatcgggcatacctccaaatctggggattcagtgatcttcttacggccaggag 5488
Query: 164 gcttgacccctctctttatttggttcaacgtggcttgtattggtgaagtatattttatag 223
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 5489 gcttgacccctctctttatttggttcaacgtggcttgtattggtgaagtatatgagaaag 5548
Query: 224 aacgttgttgcagtggtggtgcaaatgctatgcttgaacgaacattacgcaacgatagtc 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5549 aacgttgttgcagtggtggtgcaaatgctatgcttgaacgaacattacgcaacgatagtc 5608
Query: 284 tagtcagactactgctcaatccgaaaacctgtttgaacattggtatctttgacaggattg 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5609 tagtcagactactgctcaatccgaaaacctgtttgaacattggtatctttgacaggattg 5668
Query: 344 tttcttaagatccagtgcacgtaagtcaaactcagagttgaacttacgccaacatttatt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5669 tttcttaagatccagtgcacgtaagtcaaactcagagttgaacttacgccaacatttatt 5728
Query: 404 cactgaccgattgatataactctttcaattcaacatttgcttcataattttttgtcagtt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5729 cactgaccgattgatataactctttcaattcaacatttgcttcataattttttgtcagtt 5788
Query: 464 tctgatgatgaaaaatcatagttgaaaatattcggaagtcatgtgatcgaatatgtgttg 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5789 tctgatgatgaaaaatcatagttgaaaatattcggaagtcatgtgatcgaatatgtgttg 5848
Query: 524 ttgctgatgtccgggaaattgttcagaaaatgtgcatggtttgagagatcttttaaccta 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5849 ttgctgatgtccgggaaattgttcagaaaatgtgcatggtttgagagatcttttaaccta 5908
Query: 584 aaagattttgttcatttcgttgggaacaccagctgcactatgcgggttccgaattacgag 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5909 aaagattttgttcatttcgttgggaacaccagctgcactatgcgggttccgaattacgag 5968
Query: 644 aaaagtccttactgangtagttgttgtatttcctattntgaaatatcaaacaactatact 703
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 5969 aaaagtccttactgaggtagttgttgtatttcctattttgaaatatcaaacaactatact 6028
Query: 704 ggattatggacgatcaagctgtaaggtgggtgcaggtaaatagggtgtttgaaccaactt 763
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6029 ggattatggacgatcaagctgtaaggtgggtgcaggtaaatagggtgtttgaaccaacta 6088
Query: 764 actggattatgcgtgatagaatattgcggggttagtttgacttccggcctcgaataatta 823
|| |||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||
Sbjct: 6089 cttgaattatgcgtgatagaatattgcgggg-tagtttgacttccgggctcgagtaatta 6147
Query: 824 agtaggctgggtgttaaaagcgactgcctattttttt 860
||||||| |||||| |||||||||| ||||||||||
Sbjct: 6148 ggtaggct-ggtgtt-aaagcgactgtctattttttt 6182
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7635
Number of Sequences: 1807
Number of extensions: 7635
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)