BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZA08FM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig359 789 0.0
3x_Contig1255 620 e-177
>3x_Contig359
Length = 833
Score = 789 bits (398), Expect = 0.0
Identities = 401/402 (99%)
Strand = Plus / Plus
Query: 86 ctaatatcaagcattttgggctcggacacctttatcccctcccaggaactagacaccttc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ctaatatcaagcattttgggctcggacacctttatcccctcccaggaactagacaccttc 479
Query: 146 atcgaactcatgtggaacctcatatacttagattctagggttcaattcctcaagaaaggg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 atcgaactcatgtggaacctcatatacttagattctagggttcaattcctcaagaaaggg 539
Query: 206 acaagcaccttttgtgatttggttcctgaggaaatgcataacttaaacatcaaaaaagag 265
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 acaagcaccttttgggatttggttcctgaggaaatgcataacttaaacatcaaaaaagag 599
Query: 266 atattagaattcgagcagtattatagagcgtacctggtacgcttcgaggagatggatcta 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 atattagaattcgagcagtattatagagcgtacctggtacgcttcgaggagatggatcta 659
Query: 326 aatgaggacgagatgtttgacaagaaaaagtttattgaccagaatatcaaaggacagtac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 aatgaggacgagatgtttgacaagaaaaagtttattgaccagaatatcaaaggacagtac 719
Query: 386 ttggacgatttaaaatccaaaagaaggggatcttctagtaaaatccggaaacttgagtta 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 ttggacgatttaaaatccaaaagaaggggatcttctagtaaaatccggaaacttgagtta 779
Query: 446 ttatttaagtttccattcatgatcaaattctttgaaagagtt 487
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 ttatttaagtttccattcatgatcaaattctttgaaagagtt 821
>3x_Contig1255
Length = 5009
Score = 620 bits (313), Expect = e-177
Identities = 389/404 (96%), Gaps = 8/404 (1%)
Strand = Plus / Minus
Query: 540 acagcttttttggtgtgtttcctggtgaaaataggttaagatcaaccatacggagagagc 599
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 5007 acagcttttttggtgtgtt-cctggtgaaaataggttaagatcaaccatacggagagagc 4949
Query: 600 acgcattggaagatgcttataatgcctacggtgcggtaggcgagatgtttaaagaaaaac 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4948 acgcattggaagatgcttataatgcctacggtgcggtaggcgagatgtttaaagaaaaac 4889
Query: 660 tcggaatacaatttgtgaatgaattcggtcctgaggccggtatagatggtggaggtatca 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4888 tcggaatacaatttgtgaatgaattcggtcctgaggccggtatagatggtggaggtatca 4829
Query: 720 cganagaatttttacaaacgttagtccaagagggcttcattaatcagcctttcaaattat 779
||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 4828 cgaaggaatttttacaaacgttagtccaagaaggcttcattaatcagcctttcaaattat 4769
Query: 780 tcgacacaacatcattcaatagactttatccttctaagaatgttttccccccaaaatttg 839
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 4768 tcgacacaacatcattcaataaactttatccttctaagaatg-tttccccccaaaatttg 4710
Query: 840 aagtacattttctttcattgggaagaattttgggaaaagtgcttatatgaaaaatttttt 899
||||||| |||||||||| |||||| |||||||| |||||||||||||| ||||| ||||
Sbjct: 4709 aagtaca-tttctttcatggggaag-attttggg-aaagtgcttatatg-aaaatatttt 4654
Query: 900 ggttgatgtttgaattagcagaattcttttttgaagaagattct 943
|||||||| ||||||||||||| ||| |||||||||||||||||
Sbjct: 4653 ggttgatg-ttgaattagcagatttc-tttttgaagaagattct 4612
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7808
Number of Sequences: 1807
Number of extensions: 7808
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 2
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)