BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZA08RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1454 1629 0.0
>3x_Contig1454
Length = 9243
Score = 1629 bits (822), Expect = 0.0
Identities = 875/892 (98%), Gaps = 1/892 (0%)
Strand = Plus / Plus
Query: 44 gcttgaccacttcataatggtagattagttgggcatagaggcaaagcaattaaaatagat 103
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 3600 gcttgaccacttcataatggtagagtagttgggcatagaggcaaagcaattaaaatagat 3659
Query: 104 atataatcaaacctcgtgtcaactgttgattactatgttccagaatttatttggattact 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3660 atataatcaaacctcgtgtcaactgttgattactatgttccagaatttatttggattact 3719
Query: 164 ttaggtatatttccagtgaaatctgctacgatatagagtaaacgtctgacatattttttt 223
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 3720 ttaggtatatttccagtgaaatctgctacgatatagagtaaacgtctgacataaattggt 3779
Query: 224 agatttttgacggttgccatgaagaaattcggtgttgcggccttcggcgagtctggtcaa 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3780 agatttttgacggttgccatgaagaaattcggtgttgcggccttcggcgagtctggtcaa 3839
Query: 284 tatgatcttgcctcgaacaagttaggctcacagaataatgaattgaatgagcagctttca 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3840 tatgatcttgcctcgaacaagttaggctcacagaataatgaattgaatgagcagctttca 3899
Query: 344 atctttcaagttaaactagtggaatttgccaggcaacataataaagagctccgagatgtt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3900 atctttcaagttaaactagtggaatttgccaggcaacataataaagagctccgagatgtt 3959
Query: 404 ccccgttttcgtgcgaagtttatgagaatgtgctcagcgataggcattgatccattatct 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3960 ccccgttttcgtgcgaagtttatgagaatgtgctcagcgataggcattgatccattatct 4019
Query: 464 atattcgataagaatagccatttattccatatagatgacttctactatcagatatgcgtg 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4020 atattcgataagaatagccatttattccatatagatgacttctactatcagatatgcgtg 4079
Query: 524 aagattatagagatttgccggaacacaaaggatgtcaacggtggtgttatatctttagaa 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4080 aagattatagagatttgccggaacacaaaggatgtcaacggtggtgttatatctttagaa 4139
Query: 584 gagttgcatgtcaattatttcaagaacatgaacatagaaatggaggacattgaaaaggcc 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4140 gagttgcatgtcaattatttcaagaacatgaacatagaaatggaggacattgaaaaggcc 4199
Query: 644 attataatgttgggacccctagacggtggctttgagttgtttactataagacaganaaag 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 4200 attataatgttgggacccctagacggtggctttgagttgtttactataagacagaaaaag 4259
Query: 704 ttcttacgtagtgtgccaaatgaacttacggatgaccagactaaaattcttgaaatatgt 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4260 ttcttacgtagtgtgccaaatgaacttacggatgaccagactaaaattcttgaaatatgt 4319
Query: 764 tctatcatgggatatgccagtataactcttcttagagccaacctcaactgggaaagagta 823
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 4320 tctatcatgggatatgccagtataactcttcttagagccaacctcaactggaaaagagta 4379
Query: 824 agaagtcagtcagttttggatggaatggttgcatctggacttaatttggtgtgactcaca 883
||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||
Sbjct: 4380 agaagtcagtcagttttggatggaatggtggcatctggac-taatttgggttgactcaca 4438
Query: 884 gtctctggaaggaaaagtgttgtactgggattcgcctgggatctncaactta 935
||||||||||||| ||||||||||||||||| || || ||||| |||||||
Sbjct: 4439 gtctctggaaggagaagtgttgtactgggatccgtcttggatcatcaactta 4490
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6481
Number of Sequences: 1807
Number of extensions: 6481
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)