BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZA09FM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1712 1445 0.0
>3x_Contig1712
Length = 23668
Score = 1445 bits (729), Expect = 0.0
Identities = 801/818 (97%), Gaps = 6/818 (0%)
Strand = Plus / Plus
Query: 86 ttctttcaccaccaggtgtaccatcttctttgataccacggccacgttttatttcttctg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20609 ttctttcaccaccaggtgtaccatcttctttgataccacggccacgttttatttcttctg 20668
Query: 146 cagagcagtgacagacataagcctttccgttcttaatcaaagtttcagctaattggtata 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20669 cagagcagtgacagacataagcctttccgttcttaatcaaagtttcagctaattggtata 20728
Query: 206 actcatcgatttttttatgaggaataggtagttttccatggtttgaaccccaaccatgat 265
||||||||| | | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20729 actcatcgaagtaatca-gaggaataggtagttttccatggtttgaaccccaaccatgat 20787
Query: 266 accatgcttttgatactctcgaaatattccggagcttctgcttcagggttggtatcatca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20788 accatgcttttgatactctcgaaatattccggagcttctgcttcagggttggtatcatca 20847
Query: 326 aatcttagataacataccccgttatggtatttagcgaagccaaagttaaccataatggcc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20848 aatcttagataacataccccgttatggtatttagcgaagccaaagttaaccataatggcc 20907
Query: 386 ttagaatgaccaatatgtaaatatccgttaggttctggtgggaatctagtgtgtacttta 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20908 ttagaatgaccaatatgtaaatatccgttaggttctggtgggaatctagtgtgtacttta 20967
Query: 446 ccaccggtagccttgagatgctcagccattagttctgggtaggcctgctcattttctcca 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20968 ccaccggtagccttgagatgctcagccattagttctgggtaggcctgctcattttctcca 21027
Query: 506 accttatgcaagtcacccaagaaaccttctgtgaacatagatctctttggaccatcttct 565
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 21028 accttatgcaagtcaccccagaaaccttctgtgaacatagatctctttggaccatcttct 21087
Query: 566 tctgtttggtccttgcttgctttgccattagccttcttttcagcctttggtttcttttcc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21088 tctgtttggtccttgcttgctttgccattagccttcttttcagcctttggtttcttttcc 21147
Query: 626 ttctttacgatatctctttcatcttttggacccaaaaccttcaagatttcttcgtcaatg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21148 ttctttacgatatctctttcatcttttggacccaaaaccttcaagatttcttcgtcaatg 21207
Query: 686 attggtttgaacaaacgtggttcagcccattttaattcggngagagctttgattttggca 745
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 21208 attggtttgaacaaacgtggttcagcccattttaattcggggagagctttgattttggca 21267
Query: 746 natagaccaggcactaacttgtatctttccttc-aaatggtatctttgttatcctcaacg 804
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 21268 aatagaccaggcactaacttgtatctttccttcaaaatggtatctttgttatcctcaacg 21327
Query: 805 tactttagc-acacggtttctaacttgatcttcagtaacttcaataccgacaccggactc 863
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21328 tac-ttagcaacacggtttctaacttgatcttcagtaacttcaataccgacaccggactc 21386
Query: 864 ttttgttcagtnccac-acagtggcatcctcacccttg 900
|||||||| |||| |||||||||||||||||||||
Sbjct: 21387 -tttgttcaagtccacaacagtggcatcctcacccttg 21423
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6960
Number of Sequences: 1807
Number of extensions: 6960
Number of successful extensions: 76
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)