BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZA09RM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1756 1179 0.0
>3x_Contig1756
Length = 16846
Score = 1179 bits (595), Expect = 0.0
Identities = 687/707 (97%), Gaps = 8/707 (1%)
Strand = Plus / Plus
Query: 48 cgatgacaatttggctttgtaaaaattcaggtccactcatactttgaagccactaattgc 107
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1317 cgatgacaatttggctttggaaaaattcaggtccactcatactttgaagccactaattgc 1376
Query: 108 tatcaatatgactgaaacaggtaagctatccagggtgctaaataatattttgacacctgt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1377 tatcaatatgactgaaacaggtaagctatccagggtgctaaataatattttgacacctgt 1436
Query: 168 tacctccaagttactaccatccgccgctgcccctggtcaattgacactattctgaaatca 227
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1437 tacctccaagttactaccatccgccgctgcccctggtcaattgacactag-ctgaaatca 1495
Query: 228 accaattgtatcaccaaatcggtggattaccagccaagaagttctttgttattggttctc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1496 accaattgtatcaccaaatcggtggattaccagccaagaagttctttgttattggttctc 1555
Query: 288 caattggacattccagatctccgatcttgcacaacactgggtatgagctactaggcttac 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1556 caattggacattccagatctccgatcttgcacaacactgggtatgagctactaggcttac 1615
Query: 348 ctcatcattttgataaattcgaaactgaagatatcgaagtagttaagaaagaacttttga 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1616 ctcatcattttgataaattcgaaactgaagatatcgaagtagttaagaaagaacttttga 1675
Query: 408 ccagagaagatctcggtggcttagctgtaaccatcccattaaaactagatattattgata 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1676 ccagagaagatctcggtggcttagctgtaaccatcccattaaaactagatattattgata 1735
Query: 468 gtatgtttgaattgagcgaagccgcaaagaccattggcgctgtaaacactgttattcctt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1736 gtatgtttgaattgagcgaagccgcaaagaccattggcgctgtaaacactgttattcctt 1795
Query: 528 taagaaagaacaaattcaggggtgacaatactgattggttaggtatcaaaaactctttgg 587
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1796 taggaaagaacaaattcaggggtgacaatactgattggttaggtatcaaaaactctttgg 1855
Query: 588 tttcaaagggtgttcctagttctgttagtggttttgcaagtctgattatcggtgctggtg 647
||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 1856 tttcaaatggtgttcctagttctgttagtggttctgcaggtctgattatcggtgctggtg 1915
Query: 648 gtacttcaagagctgctat-tacgcttttgaaac-aattgggtgtaacacc-tttatttg 704
||||||||||||||||||| ||||| |||||||| |||||| ||| ||||| ||||| ||
Sbjct: 1916 gtacttcaagagctgctatatacgc-tttgaaacaaattggttgtgacaccatttatatg 1974
Query: 705 cttaa-aaaaccacgga-aaacttc-aaagctgaaatccgaattttc 748
|| || | ||||||||| ||||| | |||||||||||||||||||||
Sbjct: 1975 ctcaacagaaccacggagaaactacaaaagctgaaatccgaattttc 2021
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7278
Number of Sequences: 1807
Number of extensions: 7278
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)