BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZA10FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig332 654 0.0
3x_Contig798 357 3e-98
>3x_Contig332
Length = 1517
Score = 654 bits (330), Expect = 0.0
Identities = 398/416 (95%), Gaps = 4/416 (0%)
Strand = Plus / Minus
Query: 502 ccgctatgccaagacatatcataccaaagtcagcgtttggacaatcatttgcatgatcag 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1514 ccgctatgccaagacatatcataccaaagtcagcgtttggacaatcatttgcatgatcag 1455
Query: 562 agtctgaagtcaataatcgtattagatcccattaccatcggtgaacgtggctcaattgac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1454 agtctgaagtcaataatcgtattagatcccattaccatcggtgaacgtggctcaattgac 1395
Query: 622 gtnaaacttccgattttgaacccgcatattatttcgattattgagccatatcagtaccat 681
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1394 gtaaaacttccgattttgaacccgcatattattccgattattgagccatatcagtaccat 1335
Query: 682 gagaaagaagcttttaagaaattggctggcgatccatctcgattcttatcatctctagtg 741
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1334 gagaaggaagcttttaagaaattggctggcgatccatctcgattcttatcatctctagtg 1275
Query: 742 agtaacttgccccataatatcgacaaggtgttccttatcagcaagtatggtgggattgcc 801
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1274 agtaacttgcccataaatatcgacaaggtgttccttatcagcaagtatggt-ggattgcc 1216
Query: 802 gtctgtggaaaagaatacnaacagccatgtcttttgtaatttgtcacaagaatatcgaga 861
||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 1215 gtctgtggaaagacatacaaacagccatgtctttgtaaatttgtcacaagaatatcgaga 1156
Query: 862 attga-aaacagttattaaaatcaatttggag-aactagaatctattcaagtggat 915
||||| |||||||||| |||||||| |||||| |||||||||||||||||||||||
Sbjct: 1155 attgagaaacagttatcaaaatcaa-ttggagaaactagaatctattcaagtggat 1101
>3x_Contig798
Length = 3073
Score = 357 bits (180), Expect = 3e-98
Identities = 180/180 (100%)
Strand = Plus / Plus
Query: 86 taaactggcagttttctctgatgacttgactcattgataaaactagaataaatgatggtt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2894 taaactggcagttttctctgatgacttgactcattgataaaactagaataaatgatggtt 2953
Query: 146 ttatacactttccatatttgcagataaatggtttgatctcatcatataacgtccaaaggc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2954 ttatacactttccatatttgcagataaatggtttgatctcatcatataacgtccaaaggc 3013
Query: 206 acattttgtgggctagtgctatgatcaaaacatggattaggtgtttgaccacagaggtca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3014 acattttgtgggctagtgctatgatcaaaacatggattaggtgtttgaccacagaggtca 3073
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5960
Number of Sequences: 1807
Number of extensions: 5960
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 2
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)