BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZA10RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1338 1449 0.0
>3x_Contig1338
Length = 8134
Score = 1449 bits (731), Expect = 0.0
Identities = 821/847 (96%), Gaps = 3/847 (0%)
Strand = Plus / Plus
Query: 48 aatgcgaatttgttaactattttggaattttgcttctcatagctagctattatctgtact 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5322 aatgcgaatttgttaactattttggaattttgcttctcatagctagctattatctgtact 5381
Query: 108 tgcatcatattcgtcgaagtataggacaatatatggtcatataaaggaatggattagtcc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5382 tgcatcatattcgtcgaagtataggacaatatatggtcatataaaggaatggattagtcc 5441
Query: 168 aatgcagacgtttcgcaaagtatgtagctgctacgttcaaatatctaattcagcaaagtc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5442 aatgcagacgtttcgcaaagtatgtagctgctacgttcaaatatctaattcagcaaagtc 5501
Query: 228 acgtgctagaataacgatagaggacataaactgagagatcctcacaaccaagcaatctgt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5502 acgtgctagaataacgatagaggacataaactgagagatcctcacaaccaagcaatctgt 5561
Query: 288 gtacgactccgcgtagaattaaagacaaagaagctctgactttgtcaaatcgtcaagaaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5562 gtacgactccgcgtagaattaaagacaaagaagctctgactttgtcaaatcgtcaagaaa 5621
Query: 348 ctcataaattgagacgaaagaacacaaatcagttaaagcatcgtctaatcttaatgctgt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5622 ctcataaattgagacgaaagaacacaaatcagttaaagcatcgtctaatcttaatgctgt 5681
Query: 408 ttaaacaaccggaatggctacaaacaatctccctgctacctaattaaaccgaaagattac 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5682 ttaaacaaccggaatggctacaaacaatctccctgctacctaattaaaccgaaagattac 5741
Query: 468 attttccctagaaggaccctggcttaatcaggactgtactaaattcaatagggtccacaa 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5742 attttccctagaaggaccctggcttaatcaggactgtactaaattcaatagggtccacaa 5801
Query: 528 ctgcaaaaacatagatctattcttactaatcgttcaggtattttttcaaagacgctgaca 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5802 ctgcaaaaacatagatctattcttactaatcgttcaggtattttttcaaagacgctgaca 5861
Query: 588 gaattctgcacgtctcaatctgtcgggagtcattatgtcttttggaagacacgctgattc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5862 gaattctgcacgtctcaatctgtcgggagtcattatgtcttttggaagacacgctgattc 5921
Query: 648 attaaattgcagtcgccaaagaaaatgttagaaccaagatccacccgttttgtcgagaaa 707
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 5922 attaaattgcagtcgccaaagaaaatgttagaaccaagatccagccgttttgtcgagaag 5981
Query: 708 gtcgtctctggtagggctgtgtaaattcttccgttcaaagaaa-tttgtaaccagggaaa 766
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 5982 ttcgtctctggtagggctgtgt-aattcttccgttcaaagaaattttgtaaccagggaaa 6040
Query: 767 tgaaagccccaatgtttttgggatctggggaaattgtaccttatgtgaacctctactgaa 826
|||||| ||||||||| ||| ||||| |||| | |||||||||||||| |||||||||
Sbjct: 6041 tgaaaggtccaatgtttctggtatctgtggaattgttaccttatgtgaacgtctactgaa 6100
Query: 827 ttaattgagaaggccttcatatgcaacctta-cccaggtttaaagacctttttttctttt 885
||||||| || | | | |||||||| |||| |||||||||||||||||| | | |||||
Sbjct: 6101 ttaattgtgatgtcttcgatatgcaagcttaccccaggtttaaagaccttctctactttt 6160
Query: 886 cctacaa 892
||||||
Sbjct: 6161 tctacaa 6167
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6503
Number of Sequences: 1807
Number of extensions: 6503
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)