BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZA11FM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1746 1382 0.0
>3x_Contig1746
Length = 26672
Score = 1382 bits (697), Expect = 0.0
Identities = 773/792 (97%), Gaps = 5/792 (0%)
Strand = Plus / Plus
Query: 86 tatcgtacaggccggttcggttactaattgttgggaaacgtatgaaagtatgtatggtta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23869 tatcgtacaggccggttcggttactaattgttgggaaacgtatgaaagtatgtatggtta 23928
Query: 146 tgtttctatctgttattgcgggttgctaacaaggtgaagaaaaaaatgacattatcctat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23929 tgtttctatctgttattgcgggttgctaacaaggtgaagaaaaaaatgacattatcctat 23988
Query: 206 ttgagtaaaattttttgttgtaacgacggatgacagatgacaagacaggtgacagaaagt 265
|||||||||| | || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 23989 ttgagtaaaaaaatgtggggtaacgacggatgacagatgacaagacaggtgacagaaagt 24048
Query: 266 aggacgacggagctgcagcggatgtccatctttttcaattcggtgtgatcaccggttggg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24049 aggacgacggagctgcagcggatgtccatctttttcaattcggtgtgatcaccggttggg 24108
Query: 326 gttgagtagaacgggacacgtcagattgggacatgtgaatagccttacatcacgtgatcg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24109 gttgagtagaacgggacacgtcagattgggacatgtgaatagccttacatcacgtgatcg 24168
Query: 386 aggtgagaagttcaatggcatcgttatttcgaattgttatgtattttggtgaatatagcc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24169 aggtgagaagttcaatggcatcgttatttcgaattgttatgtattttggtgaatatagcc 24228
Query: 446 gaatacgtaaataggttaattacatcttcctttgtcatgtcataagttatcatcagtagt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24229 gaatacgtaaataggttaattacatcttcctttgtcatgtcataagttatcatcagtagt 24288
Query: 506 aaaattaatggttacaaactcttgttcgtttcatttatatttaaattttgcatatttttt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24289 aaaattaatggttacaaactcttgttcgtttcatttatatttaaattttgcatatttttt 24348
Query: 566 ttatggtgtttagatcgatgctctttggtctttcaattggtaaaccaaggattctgtccc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24349 ttatggtgtttagatcgatgctctttggtctttcaattggtaaaccaaggattctgtccc 24408
Query: 626 aaaccaactgtgacaagggtcccattgcccttgaacaaccgaatatttactgtg-aaaat 684
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 24409 aaaccaactgtgacaagggtcccattgcccttgaacaaccgaata-ttactgtgaaaaat 24467
Query: 685 agtagctgatcaataccgtagtggtagaataaaattcctgatgcgctgncgacgtttgga 744
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 24468 agtagctgatcaataccgtagtggtagaataaaattcctgatgcgctgtcgacgtttgga 24527
Query: 745 tatggattttttgttttaccatgttcttt-aagacttttggtgcaatttgtgattattgt 803
|||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 24528 tatggattctttgttttaccatgttctttcaagacttttggtgcaatttgtgataattgt 24587
Query: 804 ttcattaattggactttgccttcagatttgtaattcttttggttttcttttcttcaaaat 863
||||| |||||||||||| | ||||||||| ||||||||||| | |||||||| ||||||
Sbjct: 24588 ttcatcaattggactttggcatcagatttg-aattcttttgg-tctcttttctgcaaaat 24645
Query: 864 tcaacattgcat 875
||||||||||||
Sbjct: 24646 tcaacattgcat 24657
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8238
Number of Sequences: 1807
Number of extensions: 8238
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)