BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC25ZA11RM1.SCF screened BAC_end (935 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig690 797 0.0 >3x_Contig690 Length = 2822 Score = 797 bits (402), Expect = 0.0 Identities = 471/490 (96%), Gaps = 3/490 (0%) Strand = Plus / Minus Query: 42 gctttatgagggactagacactgtttatgatgttgatatacccaataacatcaaagggaa 101 ||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||| Sbjct: 1186 gctttatgagggactagacactggtaatgatgttgatatacccaatagcatcaaagggaa 1127 Query: 102 agacttaatgataatgaaaaaagttcttgagaaagtgaggcataagactaaagctatcaa 161 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1126 agacttaatgataatgaaaaaagttcttgagaaagtgaggcataagactaaagctatcaa 1067 Query: 162 caagaacttattagccttggagaatgttttgttggatagggctgctgagattggata-aa 220 ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| | || Sbjct: 1066 caagaacctattagccttggagaatgttttgttggatagggctgctgagatcggagacaa 1007 Query: 221 ttatgctatatcgctcttatgttttgatgttctaaaggatccagacagtaatactgaaga 280 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1006 tgatgctatatcgctcttatgttttgatgttctaaaggatccagacagtaatactgaaga 947 Query: 281 tgacgtatctcatgcaaagaaattgattaagaacctctatcaaatgaatcaccctttaac 340 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 946 tgacgtatctcatgcaaagaaattgattaagaacctctatcaaatgaatcaccctttaac 887 Query: 341 cgtcaaactaactgctgatatagctctgaagaaccatgacgatgctactgtcgaagtgta 400 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 886 cgtcaaactaactgctgatatagctctgaagaaccatgacgatgctactgccgaagtgta 827 Query: 401 ctatatgaaatttttgga-ttacagaatgatacttacttagctggataagtatacggtca 459 |||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||| Sbjct: 826 ctatatgaaatttttggatttacagaatgatactttcttagctggagaagtatacggtca 767 Query: 460 attgggccagatccactttaaaaaacctaattttatggaatcatagtaaatgtttcttaa 519 |||||||||||||||||||| |||||| ||| |||| ||| || || ||||||||||||| Sbjct: 766 attgggccagatccactttagaaaaccgaatcttattgaagcagag-aaatgtttcttaa 708 Query: 520 aatcaatcaa 529 |||||||||| Sbjct: 707 aatcaatcaa 698 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7902 Number of Sequences: 1807 Number of extensions: 7902 Number of successful extensions: 47 Number of sequences better than 1.0e-20: 1 length of query: 935 length of database: 10,358,551 effective HSP length: 16 effective length of query: 919 effective length of database: 10,329,639 effective search space: 9492938241 effective search space used: 9492938241 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)