BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZA12RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1700 1394 0.0
>3x_Contig1700
Length = 16332
Score = 1394 bits (703), Expect = 0.0
Identities = 754/767 (98%), Gaps = 3/767 (0%)
Strand = Plus / Plus
Query: 49 tgatgttatcaaaccgtattttgaaggaatgtttcaggatagacgtaatccagaagaaag 108
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 14771 tgatgttatcaaaccgtatattgaaggaatgtttcaggatagacgtaatccagaagaaag 14830
Query: 109 gctgttggaacctggggtcataccagctggtaataccaccgtggattctgacgatactgc 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14831 gctgttggaacctggggtcataccagctggtaataccaccgtggattctgacgatactgc 14890
Query: 169 tgtcgatgagaacgatggtggtatcgttcccacttctgatatagtggtttttgatgaaga 228
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 14891 tgtcgatgagaacgatggtggtatcgttcccacttctgatatagtggtagttgatgaaga 14950
Query: 229 gcctgataatgcagatgacagtggtgttcatgatatagaattgaatgacgaagaagatct 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14951 gcctgataatgcagatgacagtggtgttcatgatatagaattgaatgacgaagaagatct 15010
Query: 289 cgaagacgatataaacgatttccgtttaactgaaagagtaaaagattatgactcacaagc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15011 cgaagacgatataaacgatttccgtttaactgaaagagtaaaagattatgactcacaagc 15070
Query: 349 tgcccttgatagtgaacaagaaatacacgataaaatgcaagaagggctcttacgtgctca 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15071 tgcccttgatagtgaacaagaaatacacgataaaatgcaagaagggctcttacgtgctca 15130
Query: 409 gactgaagatttggctatcagtgacgagcccccattgttccgcatgcaaaagagctcata 468
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 15131 gactgaagatttggctatcagtgacgagcccccattgttccgcatgcaaaagagctcaga 15190
Query: 469 tgcccacaatatttcatggtctgctgaagtcataaggatagacaagttgcatgagccatt 528
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 15191 tgcccacaatatttcatggtctgctgaagtcataaggatagacaagttgcatgagccaat 15250
Query: 529 caggcagaagacgagaatccaattgagtgcagtaaataaacaaacttcctttatgcgtac 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15251 caggcagaagacgagaatccaattgagtgcagtaaataaacaaacttcctttatgcgtac 15310
Query: 589 acaattggaatcattgttcaacaaacctatcagtgatcgggagctcggggcattggcatg 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15311 acaattggaatcattgttcaacaaacctatcagtgatcgggagctcggggcattggcatg 15370
Query: 649 gcttttagggttctggttaggcgacggctatagaaagtgttcaatgtttgcattaaacaa 708
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 15371 gcttttagggttctggttaggcgacggctatagaaggtgttcaatgtttgcattaaacaa 15430
Query: 709 aggagatcacgatgtcaattagactttgaaaaggtacggcgaaatctgggntttgagtat 768
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 15431 agaagatcacgatgtcaattagactttgaaaaggtacggcgaaatctggg-tttgagtat 15489
Query: 769 gacaattggtaaattgcatgggaaaatttatgtgccacagcattttt 815
|| || ||||||||||||| |||||||||| |||| |||||||||||
Sbjct: 15490 gagaa-tggtaaattgcat-ggaaaatttaggtgcaacagcattttt 15534
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6553
Number of Sequences: 1807
Number of extensions: 6553
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)