BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZB01RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1757 1362 0.0
>3x_Contig1757
Length = 24754
Score = 1362 bits (687), Expect = 0.0
Identities = 767/782 (98%), Gaps = 10/782 (1%)
Strand = Plus / Minus
Query: 49 tatcatcattagttagattcagtggcttaaaatataaactgtaaaagtgatttcattcgt 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15250 tatcatcattagttagattcagtggcttaaaatataaactgtaaaagtgatttcattcgt 15191
Query: 109 atatgaggtttttttgaagagttttttaaacattatatggtaccagtaccttctgggatt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15190 atatgaggtttttttgaagagttttttaaacattatatggtaccagtaccttctgggatt 15131
Query: 169 attatatcattgtgtagagttcaaccctcaattgacttacttttgaatctaaagacttta 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15130 attatatcattgtgtagagttcaaccctcaattgacttacttttgaatctaaagacttta 15071
Query: 229 tttgctgcgcgactggtttataaggtgtgctaatagagatctccaagacaaaaatacaga 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15070 tttgctgcgcgactggtttataaggtgtgctaatagagatctccaagacaaaaatacaga 15011
Query: 289 taatgggaattgtgtccgtcgtgcaggatttcttctcgctagagactctagatcaacgtt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15010 taatgggaattgtgtccgtcgtgcaggatttcttctcgctagagactctagatcaacgtt 14951
Query: 349 tgacggcacctacgaatgattctcgtcgtaaacagaaattggggccagaaattcaatcta 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14950 tgacggcacctacgaatgattctcgtcgtaaacagaaattggggccagaaattcaatcta 14891
Query: 409 gatggtcgtcattagaattcaaggcttattggttaatcttgtgtatagtgctaccgttga 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14890 gatggtcgtcattagaattcaaggcttattggttaatcttgtgtatagtgctaccgttga 14831
Query: 469 tgcttaaggcaggaatggatgctactaactcatggaattcaaactattacaagtaccagc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14830 tgcttaaggcaggaatggatgctactaactcatggaattcaaactattacaagtaccagc 14771
Query: 529 atttgttgagtaagggatggatgttcggaagaaaagttgataacagcgatgcccagtata 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14770 atttgttgagtaagggatggatgttcggaagaaaagttgataacagcgatgcccagtata 14711
Query: 589 gattttttagagataatctattgttactggtgggtctgatggtacttcatttatttataa 648
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 14710 gattttttagagataatctattgttactggtgggtctgatggtacttcatttatctatca 14651
Query: 649 agaaagctgtgctccattttaccaatgtacaaaaggtgacgtttgattttttggtttggg 708
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 14650 agaaagctgtgctccaatttaccaatgtacaaaaggtgacgtttga-tttttggtttggg 14592
Query: 709 ttagtttttcttaattggtgcacatggccggtaaactgcttggcgccgttttgttccatg 768
|||| ||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||
Sbjct: 14591 ttag-ttttcttaattggtgcacatggc--gtaaactgctt-gcg-cgttttgttccatg 14537
Query: 769 ttcctattaatgttcacccctagccacagacatttaagaagcaaaagagcattggcaact 828
|| ||| ||||||||| ||||||||| |||||||||||| || |||||||||||||||||
Sbjct: 14536 tt-ctagtaatgttca-ccctagcca-agacatttaagaggc-aaagagcattggcaact 14481
Query: 829 tt 830
||
Sbjct: 14480 tt 14479
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6949
Number of Sequences: 1807
Number of extensions: 6949
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)