BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZB02FM1.SCF screened BAC_end
(898 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1280 1479 0.0
>3x_Contig1280
Length = 5058
Score = 1479 bits (746), Expect = 0.0
Identities = 782/793 (98%), Gaps = 1/793 (0%)
Strand = Plus / Minus
Query: 87 ccaccgcttcacttaaaaatttcgatggatgtagtgtcacaatacgtttcaatgtgctac 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1722 ccaccgcttcacttaaaaatttcgatggatgtagtgtcacaatacgtttcaatgtgctac 1663
Query: 147 ccatcaactcaataatcgagtaaaatctcaattcagtgatgacttcctgaggtaatctgc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1662 ccatcaactcaataatcgagtaaaatctcaattcagtgatgacttcctgaggtaatctgc 1603
Query: 207 cgtaaaaggctttttcttctttcaaatcaggaatagattcattagcagatttaggtgttg 266
|||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1602 cgtaaaaggcatatccttctttcaaatcaggaatagattcattagcagatttaggtgttg 1543
Query: 267 gcgaatccttgacagcattcttctcttcctcttcttcagttttatcactagaaccctcat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1542 gcgaatccttgacagcattcttctcttcctcttcttcagttttatcactagaaccctcat 1483
Query: 327 cctctgtgtaagtttcatcaccggaatcctcattctcaggatccataactggttcttcct 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1482 cctctgtgtaagtttcatcaccggaatcctcattctcaggatccataactggttcttcct 1423
Query: 387 ccacaatgaacctcactagtgactcatcattaatccgtaggctgctcattagctcacatc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1422 ccacaatgaacctcactagtgactcatcattaatccgtaggctgctcattagctcacatc 1363
Query: 447 cagcaaagaaacactcttttgggttaccgaacaatgctacttcattaaaacatttcatga 506
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1362 cagaaaagaaacactcttttgggttaccgaacaatgctacttcattaaaacatttcatga 1303
Query: 507 tcacagtcaaaaacttcttggaacgatcagcaccaaggtgattattattgccccaatgaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1302 tcacagtcaaaaacttcttggaacgatcagcaccaaggtgattattattgccccaatgaa 1243
Query: 567 tgaatttgatcaaaattttgggcaaatcccacccaatttcatacactacatctttattct 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1242 tgaatttgatcaaaattttgggcaaatcccacccaatttcatacactacatctttattct 1183
Query: 627 gttgtaaaagggataggacttcactcaaatattcatacttttgttctaaacttcccttga 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1182 gttgtaaaagggataggacttcactcaaatattcatacttttgttctaaacttcccttga 1123
Query: 687 agttcacttcttcagaataaaggtccaagatagtaacaagggtgattatatcactcttct 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1122 agttcacttcttcagaataaaggtccaagatagtaacaagggtgattatatcactcttct 1063
Query: 747 cttccacaaaagctgtgagtaacttttcctcaatctcttttgaacgttcaacttctaaag 806
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1062 cttccacaaaagctgtgagtaacttttcctcaatctctttgaaacgttcaacttctaaag 1003
Query: 807 gcatcttgaactcacaacgaatatagtttttggttacaagttggagaccagnagtaaaat 866
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 1002 gcatcttgaactcacaacgaatatagtttttgg-tacaagttggagaccagagtaaaaat 944
Query: 867 gcttatacccttt 879
|||||||||||||
Sbjct: 943 gcttatacccttt 931
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7089
Number of Sequences: 1807
Number of extensions: 7089
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 1
length of query: 898
length of database: 10,358,551
effective HSP length: 16
effective length of query: 882
effective length of database: 10,329,639
effective search space: 9110741598
effective search space used: 9110741598
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)