BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZB02RM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig758 1195 0.0
>3x_Contig758
Length = 3384
Score = 1195 bits (603), Expect = 0.0
Identities = 691/707 (97%), Gaps = 10/707 (1%)
Strand = Plus / Plus
Query: 42 gctttcgccaaactggtatcatttcatggccagaaaggttcataaactgtgacttgttga 101
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 27 gctttcgccaaactggtatcatagcatggccagaaaggttcataaactgtgacttgtt-a 85
Query: 102 aaagcatcaagagatttaatctaggttcatggcaatattgaatatgaggtgagacgtttg 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 aaagcatcaagagatttaatctaggttcatggcaatattgaatatgaggtgagacgtttg 145
Query: 162 atgtcttcaacacggcatccgggcaaaattcattcttaagcattcttaacatattgtatt 221
||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct: 146 atgtcttcaacacggcatccgggcaaaattcattcttaagcattcttaacataatg-act 204
Query: 222 ccggcattatgtcttgtacttcgatataacggttctgggtttcctaaagcgctaagacat 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ccggcattatgtcttgtacttcgatataacggttctgggtttcctaaagcgctaagacat 264
Query: 282 aatagcttctgagcgctcatgacagtttgaacgagcctaggcggaacgtacaaccagggc 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatagcttctgagcgctcatgacagtttgaacgagcctaggcggaacgtacaaccagggc 324
Query: 342 tcgatataattggaattgttacatttgttagcatgtatggatgattgattttcttaaatt 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcgatataattggaattgttacatttgttagcatgtatggatgattgattttcttaaatt 384
Query: 402 tgatgattagagtaaagttaacaatttagataatcgaacaaaaaaggaacctcgctaaca 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgatgattagagtaaagttaacaatttagataatcgaacaaaaaaggaacctcgctaaca 444
Query: 462 gctattaccaaaaataaatggaaactgaacggtaggttatcacaggattctcgtatattc 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctattaccaaaaataaatggaaactgaacggtaggttatcacaggattctcgtatattc 504
Query: 522 gacagaagctacacaagagatactattaatatacaactatctagcctcttttgagcaaaa 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gacagaagctacacaagagatactattaatatacaactatctagcctcttttgagcaaaa 564
Query: 582 tgtcttct-acaacaggaaaaagcttttgcttatgggccgttctggcttcggtaagtcat 640
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 565 tgtcttctaacaacaggaaaaagcttttgcttatgggccgttctggctccggtaagtcat 624
Query: 641 caatgaggtcaattatctttcagtaactacagntgcatttgatacaaggcgttttagggg 700
||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 625 caatgaggtcaattatc-ttcagtaactacag-tgcatttgatacaaggcg-tttagggg 681
Query: 701 caactatttgatgttggagcatttcccatttgaagattcttaaggaa 747
|||||| |||||| ||||||| |||||||||| ||||||||| ||||
Sbjct: 682 caacta-ttgatg-tggagca-ttcccatttg-agattcttagggaa 724
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7628
Number of Sequences: 1807
Number of extensions: 7628
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)