BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZB03RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig161 1172 0.0
3x_Contig809 151 3e-36
3x_Contig743 133 7e-31
>3x_Contig161
Length = 858
Score = 1172 bits (591), Expect = 0.0
Identities = 653/674 (96%)
Strand = Plus / Minus
Query: 101 agggttcagaactaccaagtactgtagatctgaaggaactcgagttgattataaactaca 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 agggttcagaactaccaagtactgtagatctgaaggaactcgagttgattataaactaca 799
Query: 161 aatacaaacaggaagttacgcgatgcctttgaaaacgattatctgtattggtatggctgg 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 aatacaaacaggaagttacgcgatgcctttgaaaacgattatctgtattggtatggctgg 739
Query: 221 tgccgggaaaaccactttcatgcaaagattgaactcccatcttcatgcagctaaggagcc 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tgccgggaaaaccactttcatgcaaagattgaactcccatcttcatgcagctaaggagcc 679
Query: 281 accatatgtgattaatttggatccagcggtgttgaatgttccatacggtgcgaatataga 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 accatatgtgattaatttggatccagcggtgttgaatgttccatacggtgcgaatataga 619
Query: 341 tatccgtgattccatcaagtacaaaaaagtgatggagaattatgagttgggacctaacgg 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tatccgtgattccatcaagtacaaaaaagtgatggagaattatgagttgggacctaacgg 559
Query: 401 tgctattgtaacaagtctaaacttgttcagtacgaagatcgatcaagtgctcaaactagt 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tgctattgtaacaagtctaaacttgttcagtacgaagatcgatcaagtgctcaaactagt 499
Query: 461 ggagaataaacaagacaaatacgagcattgtatcattgacacaccgggccagattgaatg 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ggagaataaacaagacaaatacgagcattgtatcattgacacaccgggccagattgaatg 439
Query: 521 ttttgtgtggagcgcttcaggtcaaattattactgaatcctttgcttcaactttccctac 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttttgtgtggagcgcttcaggtcaaattattactgaatcctttgcttcaactttccctac 379
Query: 581 tgttattgcctatatcgttgacacaccaagaaacacctcgccaacaacgttcatgagtaa 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tgttattgcctatatcgttgacacaccaagaaacacctcgccaacaacgttcatgagtaa 319
Query: 641 catgttatatgcctgttcaatattgtacaagactaagctaccattgattgtggttttcaa 700
|||||||||||||||||||||||||||||| ||||| |||||||| ||| | |||||||
Sbjct: 318 catgttatatgcctgttcaatattgtacaacactaacctaccattcattctccttttcaa 259
Query: 701 caagagcgatgtccaaaactgcgactttgctaaagaatggatgacggatttcgaagcttt 760
||| | | || ||||||||||||||||| ||||| ||| || || ||||| || ||||
Sbjct: 258 caacacccatctccaaaactgcgactttcctaaacaatccatcacccatttccaaccttt 199
Query: 761 ccanactgcactaa 774
||| ||| ||||||
Sbjct: 198 ccaaactccactaa 185
>3x_Contig809
Length = 3151
Score = 151 bits (76), Expect = 3e-36
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 44 gcttttgtcatctcatcgaatgagtggtaaagatagagaatacaagagcaagggatcagg 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3076 gcttttgtcatctcatcgaatgagtggtaaagatagagaatacaagagcaagggatcagg 3135
Query: 104 gttcagaactaccaag 119
||||||||||||||||
Sbjct: 3136 gttcagaactaccaag 3151
>3x_Contig743
Length = 2201
Score = 133 bits (67), Expect = 7e-31
Identities = 73/75 (97%)
Strand = Plus / Plus
Query: 864 ttttattcccaattagacgtgtgtagcgtttctagtttaactggtgacgggtttgatgat 923
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 7 ttttattcccaattagacgtgtgtagcgtttctagtttcactggtgacgggtttgatgag 66
Query: 924 ttcctaaacgttgtg 938
|||||||||||||||
Sbjct: 67 ttcctaaacgttgtg 81
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6028
Number of Sequences: 1807
Number of extensions: 6028
Number of successful extensions: 24
Number of sequences better than 1.0e-20: 3
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)