BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZB04FM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1789 1417 0.0
>3x_Contig1789
Length = 30977
Score = 1417 bits (715), Expect = 0.0
Identities = 801/822 (97%), Gaps = 7/822 (0%)
Strand = Plus / Plus
Query: 88 tataaggagccaatctaaggacagaggtggtttacgatatgttgaatgctgccagaatga 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28699 tataaggagccaatctaaggacagaggtggtttacgatatgttgaatgctgccagaatga 28758
Query: 148 actcatctcttttatttaaagctcatctccataatgtaacaacaagagccacaagaagac 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28759 actcatctcttttatttaaagctcatctccataatgtaacaacaagagccacaagaagac 28818
Query: 208 tactttcacagagctgtaaactggggcagaagcatgtcagcagcaccgcagatgctattg 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28819 tactttcacagagctgtaaactggggcagaagcatgtcagcagcaccgcagatgctattg 28878
Query: 268 aagaacataataccatttctgaggtgatagaagagatcaaacagaaaaagaacccggata 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28879 aagaacataataccatttctgaggtgatagaagagatcaaacagaaaaagaacccggata 28938
Query: 328 aagaggcgatgaacaggttattgaatccagtgtttttcaataaacagatcgtcttctctg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28939 aagaggcgatgaacaggttattgaatccagtgtttttcaataaacagatcgtcttctctg 28998
Query: 388 ataaatcaccatcatggacagggataatggagacggataaagattctgatagccagacac 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28999 ataaatcaccatcatggacagggataatggagacggataaagattctgatagccagacac 29058
Query: 448 cgctaccccattccagtttcaggcttagtgatcatgatataagagatttaccaatatcgg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29059 cgctaccccattccagtttcaggcttagtgatcatgatataagagatttaccaatatcgg 29118
Query: 508 cgaccagttatcaaaatgtgcgattatccggcatagagaaagccattcaactagtggcag 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29119 cgaccagttatcaaaatgtgcgattatccggcatagagaaagccattcaactagtggcag 29178
Query: 568 aaaaagagaagttgagagtagcattggaacacgcactagccccacatttgaatcatttaa 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29179 aaaaagagaagttgagagtagcattggaacacgcactagccccacatttgaatcatttaa 29238
Query: 628 agaagactgtgnaccacagat-aagagttgttggacacttgcatgcattacttggaccaa 686
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 29239 agaagactgtg-accacagataaagagttgttggacacttgcatgcattacttggaccaa 29297
Query: 687 tacttgcaaagggatcccaagatggaggttcanacgaaaagg-tcatcgaagtgatccac 745
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 29298 tacttgcaaagggatcccaagatggaggttcaaacgaaaaggttcatcgaagtgatccac 29357
Query: 746 aagagatcttgcgaggaa-catnncatttaccacaaccttnnatcataacgttacctggc 804
|||||||||||||||||| ||| ||||||||||||||| ||||||||||||| |
Sbjct: 29358 aagagatcttgcgaggaaccatccaatttaccacaaccttattcaataacgttacctgcc 29417
Query: 805 atcatacggtacatatttgataggggaaagttcaaactacctgggagat-gaaactatat 863
||||||||||||||||||||||| ||| |||||||||||||| |||||| ||||||||||
Sbjct: 29418 atcatacggtacatatttgatagtggagagttcaaactacct-ggagatagaaactatat 29476
Query: 864 tatatttaagacaatttac-ataaatgccaaagttgtaaaga 904
|||||| |||||||||||| |||||||| |||||||||||||
Sbjct: 29477 tatattaaagacaatttacaataaatgcaaaagttgtaaaga 29518
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5925
Number of Sequences: 1807
Number of extensions: 5925
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)