BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZB04RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1732 1437 0.0
>3x_Contig1732
Length = 24266
Score = 1437 bits (725), Expect = 0.0
Identities = 768/777 (98%), Gaps = 4/777 (0%)
Strand = Plus / Minus
Query: 48 gctttataagaaggacaaggagttagaagatattagtgcaaagattgatatgggagtagc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11201 gctttataagaaggacaaggagttagaagatattagtgcaaagattgatatgggagtagc 11142
Query: 108 aaatgaatatgagttgttgcgctataaggaactaaaaaatacgttaagaacaagagatgt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11141 aaatgaatatgagttgttgcgctataaggaactaaaaaatacgttaagaacaagagatgt 11082
Query: 168 ggagaaattgaaacaataccaaaagattatagagaaagatgggactgagaatttggataa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11081 ggagaaattgaaacaataccaaaagattatagagaaagatgggactgagaatttggataa 11022
Query: 228 gattaccttggaaaacaacgatcaaaacaagattaacgagaaaattctacctgctaggga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11021 gattaccttggaaaacaacgatcaaaacaagattaacgagaaaattctacctgctaggga 10962
Query: 288 taccactgatttctatgaaatgaaggcagaagagtacgatgagggtgtgagttttgaaga 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10961 taccactgatttctatgaaatgaaggcagaagagtacgatgagggtgtgagttttgaaga 10902
Query: 348 aatgatgatcagaatgggtaaaagacgtaagtggctcatgaaacattgtaaaggagatgt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10901 aatgatgatcagaatgggtaaaagacgtaagtggctcatgaaacattgtaaaggagatgt 10842
Query: 408 tctcgaagtcgcttgtggtactggtaggaatatcaaatatttagacccaacgaagatcaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10841 tctcgaagtcgcttgtggtactggtaggaatatcaaatatttagacccaacgaagatcaa 10782
Query: 468 ctcaatcacattcttggatgcatcggaaaagatgatggaaatcacaaataaaaaattcag 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10781 ctcaatcacattcttggatgcatcggaaaagatgatggaaatcacaaataaaaaattcag 10722
Query: 528 agaagcactacccaatttcaagaaatgtgcatttgttgtagggaaagcggaagatttgat 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10721 agaagcactacccaatttcaagaaatgtgcatttgttgtagggaaagcggaagatttgat 10662
Query: 588 cgacttgaactcgaaggagacacctgttaagtatgatactatttgtgaagcgtttggtct 647
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 10661 cgacttgaactcgaaggagacacctgttaagtatgatactattgttgaagcgtttggtct 10602
Query: 648 ttgttcacatcacgatcctgtaaaatctttgaagaattttgctgaattgttgaaacctgg 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10601 ttgttcacatcacgatcctgtaaaatctttgaagaattttgctgaattgttgaaacctgg 10542
Query: 708 cggtagaatcattctcttggaacacggaaga-gttcatacgatacaatcaacaaaatttc 766
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 10541 cggtagaatcattctcttggaacacggaagaggttcatacgatacaatcaacaaaa-ttc 10483
Query: 767 ttgacgatagagctgaagaacgttttaaagacatggggtttgtagattgaacttgga 823
|||||||||||||||| |||| ||||||||||||||| |||||||| |||||||||
Sbjct: 10482 ttgacgatagagctgagaaacg-tttaaagacatgggg-ttgtagatggaacttgga 10428
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9105
Number of Sequences: 1807
Number of extensions: 9105
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)