BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZB05FM1.SCF screened BAC_end
(899 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1502 1536 0.0
>3x_Contig1502
Length = 14970
Score = 1536 bits (775), Expect = 0.0
Identities = 805/813 (99%), Gaps = 2/813 (0%)
Strand = Plus / Minus
Query: 87 caatttcgagtagttgtctaataacaatggaataacatcatcaacaatattagattttga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5799 caatttcgagtagttgtctaataacaatggaataacatcatcaacaatattagattttga 5740
Query: 147 atctgtagtagattccaggttcacacaactaacgaaactcttaacagattgttggaagac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5739 atctgtagtagattccaggttcacacaactaacgaaactcttaacagattgttggaagac 5680
Query: 207 acagagcctcaatctcttacgatgttggttttgcttattcaaatctttcttaaaaggttc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5679 acagagcctcaatctcttacgatgttggttttgcttattcaaatctttcttaaaaggttc 5620
Query: 267 atgggtatctaggatagtctcgatagctgctacaagcatcacataagcgtggactatttc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5619 atgggtatctaggatagtctcgatagctgctacaagcatcacataagcgtggactatttc 5560
Query: 327 tttccaataaacattgaagagctcatctgattgttcataaatcaaattcaaaaatttaag 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5559 tttccaataaacattgaagagctcatctgattgttcataaatcaaattcaaaaatttaag 5500
Query: 387 cacccattccaataaatttaaataatcagtaacagctttagaagggcagttttgagtgct 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5499 cacccattccaataaatttaaataatcagtaacagctttagaagggcagttttgagtgct 5440
Query: 447 ggcagtcttgataacaaaatcacttatctttttacaatagatggggtcggtttcaaacaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5439 ggcagtcttgataacaaaatcacttatctttttacaatagatggggtcggtttcaaacaa 5380
Query: 507 ttggaccaggattgaagtgactagaacttttgattctttatcctgatataaatcataagt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5379 ttggaccaggattgaagtgactagaacttttgattctttatcctgatataaatcataagt 5320
Query: 567 gcttagtacgcaattgaaaatcaattccaacgccgagctatcagttttacttttatcgtt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5319 gcttagtacgcaattgaaaatcaattccaacgccgagctatcagttttacttttatcgtt 5260
Query: 627 ggattttaacagttctagggcacttcttaataccggtagcctgactgtcaataaagaagc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5259 ggattttaacagttctagggcacttcttaataccggtagcctgactgtcaataaagaagc 5200
Query: 687 gtggcagtctctgtaaagaacaggctctaaattttcccaagtagacatccgtaaatactg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5199 gtggcagtctctgtaaagaacaggctctaaattttcccaagtagacatccgtaaatactg 5140
Query: 747 ttgaaaaatgagatgagacttctcaactatgtcgtactttttataaattaagagtcgggt 806
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 5139 ttgaaaaatgagatgagacttctcaactatgtcgtacttttaataaattaagagtcggta 5080
Query: 807 attttcaatggcttgccgctgataagcgtcttaaacaacattgcttnanatcacaactca 866
||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||
Sbjct: 5079 attttcaatggcttgccgctgataagcgtctaaaacaacattgctt-aaatcacaactca 5021
Query: 867 tctctgnaataatgaactctggctcttgtttaa 899
|||||| ||||||||||||| ||||||||||||
Sbjct: 5020 tctctgaaataatgaactct-gctcttgtttaa 4989
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7149
Number of Sequences: 1807
Number of extensions: 7149
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 899
length of database: 10,358,551
effective HSP length: 16
effective length of query: 883
effective length of database: 10,329,639
effective search space: 9121071237
effective search space used: 9121071237
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)