BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZB05RM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1319 1102 0.0
3x_Contig1381 105 2e-22
>3x_Contig1319
Length = 7600
Score = 1102 bits (556), Expect = 0.0
Identities = 613/626 (97%), Gaps = 6/626 (0%)
Strand = Plus / Minus
Query: 216 actagtactcgaactgtcgctatcatcatcgtcatcatcgtcatcgtcatcatcatcatc 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7578 actagtactcgaactgtcgctatcatcatcgtcatcatcgtcatcgtcatcatcatcatc 7519
Query: 276 atcatcatcatcatcatcatcgtcatcatctactgccattgtacctccttcatcctccga 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7518 atcatcatcatcatcatcatcgtcatcatctactgccattgtacctccttcatcctccga 7459
Query: 336 gagagactggtagtctgaagacgctgtagcactgtccgaacctgatgtgatggctgagtc 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7458 gagagactggtagtctgaagacgctgtagcactgtccgaacctgatgtgatggctgagtc 7399
Query: 396 ctgattcgttgatatcagctttccgttcttacccatcgcattcgaagatcgaccttttag 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7398 ctgattcgttgatatcagctttccgttcttacccatcgcattcgaagatcgaccttttag 7339
Query: 456 cttagttccggctttgggattcttatataacggtaacttggacaaattcgagcccctgct 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7338 cttagttccggctttgggattcttatataacggtaacttggacaaattcgagcccctgct 7279
Query: 516 gttcgaatcctgtggtatatcactcagcgacgaatcactagaatatattagactgaaacg 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7278 gttcgaatcctgtggtatatcactcagcgacgaatcactagaatatattagactgaaacg 7219
Query: 576 tctcggtctagaacttaaatgcggaggcttatccttcttatttcccattttatcctgtaa 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7218 tctcggtctagaacttaaatgcggaggcttatccttcttatttcccattttatcctgtaa 7159
Query: 636 cgctttcagagtcgtaggcttcttcccactagttaacttcctcgggcttttacctgacat 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7158 cgctttcagagtcgtaggcttcttcccactagttaacttcctcgggcttttacctgacat 7099
Query: 696 aatatatatgtgttatcaagtggcaattagcagctgcaataatgggattctactctttaa 755
||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 7098 aatatatatgtgttatc-agttgcaattagcagctgcaataatggtattctactctttag 7040
Query: 756 tggaactttnctatatgcacctggnatcaaatcaataggctcaccaattttattaaaaag 815
||| ||||| |||||||||||||| |||||||||||||||||| ||| |||| |||||||
Sbjct: 7039 tgg-acttttctatatgcacctgg-atcaaatcaataggctcaacaa-tttaataaaaag 6983
Query: 816 aaaaccccaaaggaaaaaaaaaattt 841
|||| ||||| ||||||||||||||
Sbjct: 6982 aaaa--ccaaaagaaaaaaaaaattt 6959
>3x_Contig1381
Length = 7318
Score = 105 bits (53), Expect = 2e-22
Identities = 65/69 (94%)
Strand = Plus / Minus
Query: 237 atcatcatcgtcatcatcgtcatcgtcatcatcatcatcatcatcatcatcatcatcatc 296
||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5299 atcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatc 5240
Query: 297 gtcatcatc 305
||||||||
Sbjct: 5239 atcatcatc 5231
Score = 105 bits (53), Expect = 2e-22
Identities = 65/69 (94%)
Strand = Plus / Minus
Query: 237 atcatcatcgtcatcatcgtcatcgtcatcatcatcatcatcatcatcatcatcatcatc 296
||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5302 atcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatc 5243
Query: 297 gtcatcatc 305
||||||||
Sbjct: 5242 atcatcatc 5234
Score = 103 bits (52), Expect = 6e-22
Identities = 64/68 (94%)
Strand = Plus / Minus
Query: 238 tcatcatcgtcatcatcgtcatcgtcatcatcatcatcatcatcatcatcatcatcatcg 297
|||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5304 tcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatca 5245
Query: 298 tcatcatc 305
||||||||
Sbjct: 5244 tcatcatc 5237
Score = 103 bits (52), Expect = 6e-22
Identities = 64/68 (94%)
Strand = Plus / Minus
Query: 237 atcatcatcgtcatcatcgtcatcgtcatcatcatcatcatcatcatcatcatcatcatc 296
||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5296 atcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatc 5237
Query: 297 gtcatcat 304
|||||||
Sbjct: 5236 atcatcat 5229
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,484
Number of Sequences: 1807
Number of extensions: 10484
Number of successful extensions: 1075
Number of sequences better than 1.0e-20: 2
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)