BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZB06RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1785 1326 0.0
>3x_Contig1785
Length = 37935
Score = 1326 bits (669), Expect = 0.0
Identities = 798/826 (96%), Gaps = 12/826 (1%)
Strand = Plus / Minus
Query: 45 gcttagcattcttccagaattgatacttcccatcgttttctaatttttccaa-cggactc 103
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 15413 gcttagcattcttccagaattgagacttcccatcgttttctaatttttccaaacggactc 15354
Query: 104 tttcgacatagtgttgggattcaggtaacatcaacctccaagcaatgaaaagcactgggg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15353 tttcgacatagtgttgggattcaggtaacatcaacctccaagcaatgaaaagcactgggg 15294
Query: 164 gcccggcactgaaccagaatatagctctccaaccatgtggagaattatcaacaatttctc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 15293 gcccggcactgaaccagaatatagctctccaaccatgtggagaattatcaacaatagctc 15234
Query: 224 tttggaacacgacacctaataaataaccgaaagcataaccttcttggaatataccagaaa 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15233 tttggaacacgacacctaataaataaccgaaagcataaccttcttggaatataccagaaa 15174
Query: 284 ggatggacttagccttgtttggagcattttccaaggcagtggcagaagcaacaccaaata 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15173 ggatggacttagccttgtttggagcattttccaaggcagtggcagaagcaacaccaaata 15114
Query: 344 cagatcccataatgataccaaagatagctctacaccccaagaaagcagagaaagaattaa 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15113 cagatcccataatgataccaaagatagctctacaccccaagaaagcagagaaagaattaa 15054
Query: 404 cgaaccctgtaccgatttgaataacgataatgagagccatagttaaaacaaatgagtatt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15053 cgaaccctgtaccgatttgaataacgataatgagagccatagttaaaacaaatgagtatt 14994
Query: 464 ttctaccatatctgtcacccaaataaccaaagataagagcaccgatgacccttaatagca 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14993 ttctaccatatctgtcacccaaataaccaaagataagagcaccgatgacccttaatagca 14934
Query: 524 acaccaaagtaatggcatgagaaatatcttttacaggtctgtctagatccttggccaaat 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14933 acaccaaagtaatggcatgagaaatatcttttacaggtctgtctagatccttggccaaat 14874
Query: 584 ttgtcatgttcaatgaaacggcanagaaatctaacgcatcccaagtccatgctaagaacc 643
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 14873 ttgtcatgttcaatgaaacggcaaagaaatctaacgcatcccaagtccatgctaagaacc 14814
Query: 644 c-acgataaagtattgtgtttgcaaccagttcatcgaaacgt-aggcagggaaaggattt 701
| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 14813 caacgataaagtattgtgtttgcaaccagttcatcg-aacgtaaggcagggaaaggattt 14755
Query: 702 nataggggattc-ttccttgcttctctaatcgatgcttttgttgggaacanagtangtat 760
|||||| |||| ||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 14754 -atagggtattctttccttgcttctctaatcgatgcttttgttgggaacaaagtaggta- 14697
Query: 761 ttcttgta-ccaaatatttcctagcattcact-catgtggatctagatggcgttttc-aa 817
|||||||| ||||||||||| ||||| ||||| |||||| |||||| ||| |||| ||
Sbjct: 14696 ttcttgtagccaaatatttcttagca-tcactccatgtgatcctagattgcggtttcaaa 14638
Query: 818 tatgtgattctacc-tctggttttttcagtgaagcgatggattcat 862
|||||||||||||| |||| ||||| |||||||||||||||||||
Sbjct: 14637 tatgtgattctaccttctgctttttcaagtgaagcgatggattcat 14592
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7609
Number of Sequences: 1807
Number of extensions: 7609
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)