BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZB07FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1659 1374 0.0
>3x_Contig1659
Length = 17570
Score = 1374 bits (693), Expect = 0.0
Identities = 773/790 (97%), Gaps = 10/790 (1%)
Strand = Plus / Plus
Query: 87 caccttcctttggatgaactctcatgatcaagttcttacctggagctagagtagtcaaac 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 caccttcctttggatgaactctcatgatcaagttcttacctggagctagagtagtcaaac 385
Query: 147 ccaagatgtcgatggtgtcatctgggttgatcttgtcgtaagcagctggttcagcaaagt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ccaagatgtcgatggtgtcatctgggttgatcttgtcgtaagcagctggttcagcaaagt 445
Query: 207 tcaaaggcaacataccttgtttcttcaagttagtttcgtgaattcttgcgaaggatttgg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tcaaaggcaacataccttgtttcttcaagttagtttcgtgaattcttgcgaaggatttgg 505
Query: 267 taataatagcgaaaccacccaagaatcttggttccaaggcagcgtgttcacgagaagaac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 taataatagcgaaaccacccaagaatcttggttccaaggcagcgtgttcacgagaagaac 565
Query: 327 cttcaccgaagttttcaccaccaatgacaacccatctgatacctgcatctctgtaagctc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cttcaccgaagttttcaccaccaatgacaacccatctgatacctgcatctctgtaagctc 625
Query: 387 tagcagtgtctggaacaccggcgtattcaccagtgtagtggtgcttgacacagttagcct 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tagcagtgtctggaacaccggcgtattcaccagtgtagtggtgcttgacacagttagcct 685
Query: 447 tcttgttttcagcgttaatagcaccaatcatatagttgtttgaaatgttttccaaatgac 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tcttgttttcagcgttaatagcaccaatcatatagttgtttgaaatgttttccaaatgac 745
Query: 507 ctctgtacttcaaccatggaccagccatagagatatggtcagtggtggtcttacctagag 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ctctgtacttcaaccatggaccagccatagagatatggtcagtggtggtcttacctagag 805
Query: 567 atttgatcaagattggcatatcgaaagcatccttaccatcccaagccttgaaaggtttca 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 atttgatcaagattggcatatcgaaagcatccttaccatcccaagccttgaaaggtttca 865
Query: 627 acaattgtagacggtcagacgttggagaaacttggacagtaacggaagaacggtcctttg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 acaattgtagacggtcagacgttggagaaacttggacagtaacggaagaacggtcctttg 925
Query: 687 gtggagcttgggtagtgttttcacctgggtcgtaacccttaactggcanaccaacaccag 746
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 926 gtggagcttggtaagtgttttcacctgggtcgtaacccttaactggcaaaccaacaccag 985
Query: 747 ttgggtgttttcaacatgaaattcgttaccgtccttgtcctttcaaagtgtcnggttagg 806
|| |||| |||||||||| ||||||||||||||||||||| ||||||||||| ||||| |
Sbjct: 986 tt-ggtggtttcaacatg-aattcgttaccgtccttgtcc-ttcaaagtgtc-ggtta-g 1040
Query: 807 agggtttaaatctcaaatcaccagcaatggcgaaaagccgttagtgattttttgggagag 866
|||| |||||||||||||||||||||||||||||| || ||||||||| | ||||||
Sbjct: 1041 aggg-ttaaatctcaaatcaccagcaatggcgaaa--gcggtagtgatttct--ggagag 1095
Query: 867 gcaacgaagg 876
||||||||||
Sbjct: 1096 gcaacgaagg 1105
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5894
Number of Sequences: 1807
Number of extensions: 5894
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)