BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZB07RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1774 1485 0.0
>3x_Contig1774
Length = 27771
Score = 1485 bits (749), Expect = 0.0
Identities = 845/869 (97%), Gaps = 6/869 (0%)
Strand = Plus / Minus
Query: 49 aatcttgccttca-tatacttgtccatcttccagtttgacaattatgttttaatgttagt 107
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24205 aatcttgccttcaatatacttgtccatcttccagtttgacaattatgttttaatgttagt 24146
Query: 108 tttggttgaagatcttccggaagtgttccactgacatcaaataatctaattgtgtcatcg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24145 tttggttgaagatcttccggaagtgttccactgacatcaaataatctaattgtgtcatcg 24086
Query: 168 tatccattgcaaactaatgtttcatccatcggagaatatgatactgcggtgacacttaat 227
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 24085 tatccattgcaaactaatgtttcatccatcggagaatatgatactgcggagacacttaat 24026
Query: 228 ctagaatcatatgtagcaacaatttcatgggatgcgaagtcttcgtattgtgaccactct 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24025 ctagaatcatatgtagcaacaatttcatgggatgcgaagtcttcgtattgtgaccactct 23966
Query: 288 ggtttattgacaatttttcttgtatcccatattttaagtgttctatctaatgatccggtc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23965 ggtttattgacaatttttcttgtatcccatattttaagtgttctatctaatgatccggtc 23906
Query: 348 gctatttcatagggccgcttagggtttatgctgaaggaaccgatttttttgtctgacaat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23905 gctatttcatagggccgcttagggtttatgctgaaggaaccgatttttttgtctgacaat 23846
Query: 408 cttttcaaattaatttctgttggtttggtacgaacgtcaaacgtagtgaattcgccgctc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23845 cttttcaaattaatttctgttggtttggtacgaacgtcaaacgtagtgaattcgccgctc 23786
Query: 468 aatgtcgtcatgaataagacgttcggatcattatagttgaattgaaaatcacttatccct 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23785 aatgtcgtcatgaataagacgttcggatcattatagttgaattgaaaatcacttatccct 23726
Query: 528 aatggatcatcatactcattctttaacactagtatttcttcactgttcatatcttgtaga 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23725 aatggatcatcatactcattctttaacactagtatttcttcactgttcatatcttgtaga 23666
Query: 588 ttaattgatcttaaatatccatcgtatgaggctgctagtaacctactgctatccgtggcg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23665 ttaattgatcttaaatatccatcgtatgaggctgctagtaacctactgctatccgtggcg 23606
Query: 648 tatgtgtcaattctttctacatttttggtaaataatttcactttagtaatatcaggctcc 707
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23605 tatgtgtcaattcttcctacatttttggtaaataatttcactttagtaatatcaggctcc 23546
Query: 708 tctaattcatcctcaggttgagtttcacgaacgttccacaaaccaactttaccagccgtg 767
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 23545 tctaattcatcctcaggttgagtttcacgaacgttccacaaaccaacattaccagccgtg 23486
Query: 768 tca-cacaaatcacaagtttctttgcaactgaatggatggaaaaaagtcgcagaaatacg 826
||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 23485 tcaccacaaatcacaagtttcttgtcaactg-atggatggaaaaaagtcgcagaaatacg 23427
Query: 827 tttctgcag-taaattgatttcattggggttgaaaattatctattaattttaagacaaaa 885
|||||||| ||| ||||||||||| ||||||||| |||| || ||||| |||||
Sbjct: 23426 -ttctgcagttaatttgatttcatt-gggttgaaatatatcatatagttttagatcaaaa 23369
Query: 886 ttctcttgtaggtgttttatttcaggtgt 914
| |||||||| |||||||||||||||||
Sbjct: 23368 tcttcttgtagttgttttatttcaggtgt 23340
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7199
Number of Sequences: 1807
Number of extensions: 7199
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)