BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZB08FM1.SCF screened BAC_end
(893 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1653 1516 0.0
>3x_Contig1653
Length = 14012
Score = 1516 bits (765), Expect = 0.0
Identities = 790/797 (99%), Gaps = 1/797 (0%)
Strand = Plus / Plus
Query: 85 tgatgtcattttgccaaaatgtctgttgtacattatatatttttaccttaatgtccagcc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6478 tgatgtcattttgccaaaatgtctgttgtacattatatatttttaccttaatgtccagcc 6537
Query: 145 atcagttcccttcgtatttcaatcacacaactctgacaggaattaaatcatctcttttca 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6538 atcagttcccttcgtatttcaatcacacaactctgacaggaattaaatcatctcttttca 6597
Query: 205 gtcccaacgctaacagtattttcataagactcagcttggcttgcaaaattaacacgcgta 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6598 gtcccaacgctaacagtattttcataagactcagcttggcttgcaaaattaacacgcgta 6657
Query: 265 ctataggatatttggaaatgtcgctatatcatagcctagtatttgctatcttagtcgtgg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6658 ctataggatatttggaaatgtcgctatatcatagcctagtatttgctatcttagtcgtgg 6717
Query: 325 aattgattacattgactttgttaggtcttccacttccctcgaagtttaagaaacctgtca 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6718 aattgattacattgactttgttaggtcttccacttccctcgaagtttaagaaacctgtca 6777
Query: 385 tctctgccctttcgaaacctttcttttctcctacggttcagataacaatcaaatgcttac 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6778 tctctgccctttcgaaacctttcttttctcctacggttcagataacaatcaaatgcttac 6837
Query: 445 tagcattcattctattacttttcgttgattctataaataaagtctacagcgtagagggcg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6838 tagcattcattctattacttttcgttgattctataaataaagtctacagcgtagagggcg 6897
Query: 505 aattggataagctaaaggaagtaggtacaggtactcatcctcaaggaagaatggagattt 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6898 aattggataagctaaaggaagtaggtacaggtactcatcctcaaggaagaatggagattt 6957
Query: 565 tatcaagaaagttcttctggcagaggaacatgtacttaacgggcattactttgttcttaa 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6958 tatcaagaaagttcttctggcagaggaacatgtacttaacgggcattactttgttcttaa 7017
Query: 625 catttgtattgagccgtaccgttaaccttgtctgggagttattcgagctaaaagaggatt 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7018 catttgtattgagccgtaccgttaaccttgtctgggagttattcgagctaaaagaggatt 7077
Query: 685 atcatttgatcttgaaatcggaggaagataaactggctcctcaacaaaaggcattagaaa 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7078 atcatttgatcttgaaatcggaggaagataaactggctcctcaacaaaaggcattagaaa 7137
Query: 745 aag-aattgaatctgtagatgaagaaatttacagattgaaggagcaggcctctgctttac 803
||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 7138 aagaaattgaatctgtagatgaggaaattacaagattgaaggagcaggcctctgctttac 7197
Query: 804 agaaagaaatggagtaaaaccagggaatgggatatgaccctttatgaccttacgtctata 863
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 7198 agaaagagatggagtaaaaccagggaatgggatatgaccttttatgaccttacgtctata 7257
Query: 864 tgtatatatatatataa 880
|||||||||||||||||
Sbjct: 7258 tgtatatatatatataa 7274
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,150
Number of Sequences: 1807
Number of extensions: 10150
Number of successful extensions: 773
Number of sequences better than 1.0e-20: 1
length of query: 893
length of database: 10,358,551
effective HSP length: 16
effective length of query: 877
effective length of database: 10,329,639
effective search space: 9059093403
effective search space used: 9059093403
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)