BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZB08RM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1620 430 e-120
3x_Contig783 355 1e-97
>3x_Contig1620
Length = 12263
Score = 430 bits (217), Expect = e-120
Identities = 234/240 (97%)
Strand = Plus / Plus
Query: 47 cgtaagcaaagaaaccaatttcttagcgttcgacattacttttttcagtagagcttattt 106
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 12024 cgtaagcaaagaaaccaaatccttagcgttcgacattacttttttcagtagagcttattt 12083
Query: 107 ccttcggaaattcctcaattacgatagcaatgagtcgatggatctctatcgtgagacaac 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12084 ccttcggaaattcctcaattacgatagcaatgagtcgatggatctctatcgtgagacaac 12143
Query: 167 tattcgttggtccctatgaagtgaatttcgataatccatttttttctttttctttttttc 226
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 12144 tattcgttggtccctatgaagtgaatttcgataatccatttttttcttcaactttttttc 12203
Query: 227 attgttgcaatgttaaaagaatgaaaaaaatggcaaagatctggatgagcatatgtgaaa 286
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 12204 attgttgcaatgttaaaagaatgaaanaaatggcaaagatctggatgagcatatgtgaaa 12263
>3x_Contig783
Length = 2733
Score = 355 bits (179), Expect = 1e-97
Identities = 249/266 (93%), Gaps = 5/266 (1%)
Strand = Plus / Plus
Query: 580 cgactctttaagcagtaactaaacgttgagcatgcagccggtattttcaaggtttccata 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 cgactctttaagcagtaactaaacgttgagcatgcagccggtattttcaaggtttccata 68
Query: 640 cgcctncaaattcggctttatttcactggcttccagaagttatgcggtgtcacggaattc 699
||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 69 cgcctccaaatcgggctttatttcactggcttccagaggttatgcggtgtcacggaattc 128
Query: 700 aggttccagtatcaagttccattttaagatcggagccccagagcagacacgagatgggac 759
|||||||||||||||| |||| |||||||||| || ||||||||||||||||||||| ||
Sbjct: 129 aggttccagtatcaag-tccaatttaagatcgaag-cccagagcagacacgagatggaac 186
Query: 760 accaaagcgaaaccggcgggggaaaaataggaaaagtattgggaaaggtgatcacaggtt 819
|||||||||||||| || || ||| ||||||||||||| ||||||||||||||||||| |
Sbjct: 187 accaaagcgaaacc-gccggtgaagaataggaaaagtaatgggaaaggtgatcacagg-t 244
Query: 820 cacatttgaaggagcgattcccgcgc 845
|||||| | |||||||||||||||||
Sbjct: 245 cacattcg-aggagcgattcccgcgc 269
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9266
Number of Sequences: 1807
Number of extensions: 9266
Number of successful extensions: 468
Number of sequences better than 1.0e-20: 2
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)