BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZB09FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1793 1546 0.0
>3x_Contig1793
Length = 40499
Score = 1546 bits (780), Expect = 0.0
Identities = 824/835 (98%), Gaps = 4/835 (0%)
Strand = Plus / Plus
Query: 86 acagcgaaaatgagaattgactctcgacgtgatatgttttatggactcataaaccaattc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15145 acagcgaaaatgagaattgactctcgacgtgatatgttttatggactcataaaccaattc 15204
Query: 146 cctaacggatgaataaggtgaggctagctttaataataaaggcggcaaaaaagtgttcaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15205 cctaacggatgaataaggtgaggctagctttaataataaaggcggcaaaaaagtgttcaa 15264
Query: 206 agtctgctcgaatttagcatcatcttttgccaatactagtctgaggtcaaccttctcaac 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15265 agtctgctcgaatttagcatcatcttttgccaatactagtctgaggtcaaccttctcaac 15324
Query: 266 aagtgatctctcttggccctcactcaattgctggaacttgctcattggacaacattaaca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15325 aagtgatctctcttggccctcactcaattgctggaacttgctcattggacaacattaaca 15384
Query: 326 cacggttttatgatgtctttcttcgtacagtggcaaatatgttcaaattatttccaatct 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15385 cacggttttatgatgtctttcttcgtacagtggcaaatatgttcaaattatttccaatct 15444
Query: 386 tctgctaataagattcacatctttaaactttcaaacctttaaagtgcagtagaattcctt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15445 tctgctaataagattcacatctttaaactttcaaacctttaaagtgcagtagaattcctt 15504
Query: 446 ttgcctgatttaaatacctgattacccgcacatatccatgctatgaaaccttttttttca 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15505 ttgcctgatttaaatacctgattacccgcacatatccatgctatgaaaccttttttttca 15564
Query: 506 attgacagtttgtctatttttgtatttacataaattcaaaggggagctgatagcaattga 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15565 attgacagtttgtctatttttgtatttacataaattcaaaggggagctgatagcaattga 15624
Query: 566 aaccagaaaaaataaaacaccaactttgcatcagtccaccctaaagcaccaatagagaat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15625 aaccagaaaaaataaaacaccaactttgcatcagtccaccctaaagcaccaatagagaat 15684
Query: 626 ctaaatagctcacaacagtaataaatcaacgatagagagcctaataaatgttagaatctc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15685 ctaaatagctcacaacagtaataaatcaacgatagagagcctaataaatgttagaatctc 15744
Query: 686 ttgtctctgctcttttaaaccgatttttgggtgcctatgtcgagaatttcgatccaaccc 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15745 ttgtctctgctcttttaaaccgatttttgggtgcctatgtcgagaatttcgatccaaccc 15804
Query: 746 aacttaacgttggcatatggaacggnngatgttaaattacgcaacttgcgtttaagaaag 805
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 15805 aacttaacgttggcatatggaacgg-ggatgttaaattacgcaacttgcgtttaagacag 15863
Query: 806 gattcattanatgcattgnatctacctatcgatgtaaagtttggatattttgggagaatt 865
||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 15864 gattcattagatgcattggatctacctatcgatgtaaagtttggata-tttgggagaatt 15922
Query: 866 gactttgntaatcccatggtccagttt-anaaattaaccagtgaaagatcataat 919
||||||| ||||||||||||||||||| | |||| |||||||| |||||||||||
Sbjct: 15923 gactttgttaatcccatggtccagtttaaaaaataaaccagtg-aagatcataat 15976
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6921
Number of Sequences: 1807
Number of extensions: 6921
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)