BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZB09RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1670 1269 0.0
>3x_Contig1670
Length = 9382
Score = 1269 bits (640), Expect = 0.0
Identities = 833/884 (94%), Gaps = 11/884 (1%)
Strand = Plus / Minus
Query: 49 gcttgcaacaaatcattacgtggttaagtccgaagattcctatattagtgggctcctatc 108
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 6324 gcttgcaacaaatcattacgtggcaaagtccgaagattcctatattagtgggctcctatc 6265
Query: 109 aacaagcgttctcctacctggtgccgatatttgttattttgttttatcatttcgacaaac 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6264 aacaagcgttctcctacctggtgccgatatttgttattttgttttatcatttcgacaaac 6205
Query: 169 tcatttctttgatctctcagagatgctattgaaattaaagaaggaggcagtttgttttaa 228
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 6204 tcatttctttgatctctcagagatgctattgaaattaaagaaggaggcagtttgcatcaa 6145
Query: 229 ccatgatgtagtgattagtttagacgcattggtgcggttgataactagctgctttgttta 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6144 ccatgatgtagtgattagtttagacgcattggtgcggttgataactagctgctttgttta 6085
Query: 289 aatttcattgtaagttatttgttgagaaacgtcaaattaaccttgtaattatgccattaa 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6084 aatttcattgtaagttatttgttgagaaacgtcaaattaaccttgtaattatgccattaa 6025
Query: 349 tggaatgactggaaattcttgataaaaaagaacaggtgcatatatcatgtttaacactgt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6024 tggaatgactggaaattcttgataaaaaagaacaggtgcatatatcatgtttaacactgt 5965
Query: 409 gaaatttagctcgctacatttccggtaaattagaaacaatatagataaactattaatttt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5964 gaaatttagctcgctacatttccggtaaattagaaacaatatagataaactattaatttt 5905
Query: 469 gtgaccatatcagtactctaattacttgatgattagcttttatgagcgtttcctttattg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5904 gtgaccatatcagtactctaattacttgatgattagcttttatgagcgtttcctttattg 5845
Query: 529 aaatacgcgatatagagtttcagttcatgatttaattagatttcgaaaa-gagaccaaac 587
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 5844 aaatacgcgatatagagtttcagttcatgatttaattagatttcgaaaaggagaccaaac 5785
Query: 588 tttctttgaaaagtcgtattaaagcaggatcatganatcactattggctgnnctactt-a 646
|||||||||||||||||||||| |||||||||| |||||||||||||| |||||| |
Sbjct: 5784 tttctttgaaaagtcgtattaagcaaggatcatgaaatcactattggctg-cctacttaa 5726
Query: 647 gac-agggacttgatttcagaccatgcataattttttgccgtttag-ttattttcgatga 704
||| ||||||||||||||||||||||||||||||||||||| | || |||||||||||||
Sbjct: 5725 gacaagggacttgatttcagaccatgcataattttttgccgataagattattttcgatga 5666
Query: 705 t-atatttgatactagcaaaagttg-agattagcacagctaagaaagtttttttttagat 762
| ||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 5665 taatattagatactagcaaaagtagaagattagcacagctaagaaagtttttttttagat 5606
Query: 763 tntatgtattcatgtaccctagatatttctattaagtaggacttttggagttcccatttt 822
| |||||||||||||| ||||||||||||||| |||||| || ||| |||||| |||| |
Sbjct: 5605 tttatgtattcatgta-cctagatatttctataaagtagaacattt-gagttcacattat 5548
Query: 823 taaaaaactttaaccttccgatggccttgttttttagaaaaaggttttcttnttaaaagt 882
||||||| |||||| || |||| | ||| | | ||| | |||| | || | ||||||
Sbjct: 5547 aaaaaaacattaaccatcgaatgg-catgtctctaagagagaggtatactagtaaaaagt 5489
Query: 883 cacctttgggg-gaaacccatgattaaacgttggttgttaacct 925
|| |||||||| |||||| |||||| ||||||||| ||||||||
Sbjct: 5488 caactttggggagaaaccaatgatttaacgttggtagttaacct 5445
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7750
Number of Sequences: 1807
Number of extensions: 7750
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)