BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZB10FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1347 1405 0.0
>3x_Contig1347
Length = 6130
Score = 1405 bits (709), Expect = 0.0
Identities = 776/794 (97%), Gaps = 5/794 (0%)
Strand = Plus / Minus
Query: 86 tatcagatatcaatgttgcatctttatatcctataacgttacaatcggtgaagaaatgtg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3982 tatcagatatcaatgttgcatctttatatcctataacgttacaatcggtgaagaaatgtg 3923
Query: 146 tttcagatgcaagcccattagttcgtgccacttctgctatgactctattcaagctattcc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3922 tttcagatgcaagcccattagttcgtgccacttctgctatgactctattcaagctattcc 3863
Query: 206 aggattctaagagccatgacgaagaagacgacgtaaggagacacgatctggtgccattgt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3862 aggattctaagagccatgacgaagaagacgacgtaaggagacacgatctggtgccattgt 3803
Query: 266 tacaagaacttttagctgatcctgatccattggtgatatcttgtactttggtggtcttgc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3802 tacaagaacttttagctgatcctgatccattggtgatatcttgtactttggtggtcttgc 3743
Query: 326 agaattgcctgcccgatagattggatcttttacacggtcatttccgcagatattgtgccg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3742 agaattgcctgcccgatagattggatcttttacacggtcatttccgcagatattgtgccg 3683
Query: 386 tgttaccttctttgtcgcactgggctcaatccttattggttgaaatgttcattcggtatt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3682 tgttaccttctttgtcgcactgggctcaatccttattggttgaaatgttcattcggtatt 3623
Query: 446 ctaaacactttatcaagagaccagtgtttgttaatagggaagatcgaagtgagactccgt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3622 ctaaacactttatcaagagaccagtgtttgttaatagggaagatcgaagtgagactccgt 3563
Query: 506 tgccggaaactcctgaattggtcgactcgtggtttctagaagcaaatgaccttattatcg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3562 tgccggaaactcctgaattggtcgactcgtggtttctagaagcaaatgaccttattatcg 3503
Query: 566 atccagacctcgacctattcttaactttcttgaaacccttgttatnttcatctaatgcat 625
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 3502 atccagacctcgacctattcttaacttctttgaaacccttgttattttcatctaatgcat 3443
Query: 626 ctgtgaatatcagcgtgtcaagagcacttttcatgttggctccgttantcaaatttagag 685
|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3442 ctgtgattatcagcgtgtcaagagcacttttcatgttggctccgttatccaaatttagag 3383
Query: 686 agtttggtatgccacactgtctagtcaaggcacttcagctaagttccactgaaaaccgct 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3382 agtttggtatgccacactgtctagtcaaggcacttcagctaagttccactgaaaaccgct 3323
Query: 746 gtattatagtacagatgattgcttattatgcatcaaatgacccagaagcatttgcttcat 805
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 3322 gtattatagtacagatgattgcttattatgcatcaattgacccagaagcatttgcttcat 3263
Query: 806 tatacaggaagttttcttaccgacggcagatgatggaccttatcggtgggatcataccaa 865
||||||||| |||| ||||||| ||||||||| |||| |||| || |||||||| |||
Sbjct: 3262 tatacagga--gtttcctaccgacagcagatgat-gaccctatc-gttggatcata-caa 3208
Query: 866 actaactattatat 879
||||||||| ||||
Sbjct: 3207 actaactataatat 3194
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5153
Number of Sequences: 1807
Number of extensions: 5153
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)