BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZB10RM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig696 1037 0.0
>3x_Contig696
Length = 2788
Score = 1037 bits (523), Expect = 0.0
Identities = 634/663 (95%), Gaps = 6/663 (0%)
Strand = Plus / Minus
Query: 43 gcttcaagctaaaaagacacttattttcatcaatttaacaaatttacaatctacacacac 102
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1812 gcttcaagctaaaaagacacttaccatcatcaatttaacaaatttacaatctacacacac 1753
Query: 103 agatttttttttccctaacatccccattatttggctggactgttttaatttacacacaag 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1752 agatttttttttccctaacatccccattatttggctggactgttttaatttacacacaag 1693
Query: 163 cacacaaaatttgcacacgcacgtacacgcacacacgcacacacgcacacacttttcttc 222
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1692 cacacaaaatttgcacacgcacgtacacgcacacacgcacacacgcacacacacttcaca 1633
Query: 223 tgctttttgataaagtacacattttgcataaagacttaatggtagtttacaaaatttatt 282
|||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 1632 cgctttt-gataaagtacacattttgcataaagacttaatggtagttttcaaaatgtatt 1574
Query: 283 ttatatctctatttttataaattcataggttaatttaatgtattctcgattattgttaaa 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1573 ttatatctctatttttataaattcataggttaatttaatgtattctcgattattgttaaa 1514
Query: 343 agtagttctttgtcattgattcactgacaagaagtgcacactctcacttaaactgtttgt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1513 agtagttctttgtcattgattcactgacaagaagtgcacactctcacttaaactgtttgt 1454
Query: 403 tattcgtttctatatattgtttcattgaaaaaaaccattatatcttttaagcttgtatca 462
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1453 tattcgtttctctatattgtttcattgaaaaaaaccattatatcttttaagcttgtatca 1394
Query: 463 gtaagtatatataagtactgtttctgtgcataaatttccatgtatatagatattgccgtt 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1393 gtaagtatatataagtactgtttctgtgcataaatttccatgtatatagatattgtcgtt 1334
Query: 523 aacataaatttgcgagcttcctttttgaagatgtcccagtctatttcttgaaacctttgg 582
||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||
Sbjct: 1333 aacataaatttgcgagcttcccctttgaagatgtcccagtctatttcttgtaacccttgg 1274
Query: 583 caacagctttctcgtatgttgggtagtcgatatacccttccgaaga-attttgtaaaaag 641
||||||||| |||||||||||||||||||||||||||||||| ||| |||||||| ||||
Sbjct: 1273 caacagcttcctcgtatgttgggtagtcgatatacccttccgcagacattttgtagaaag 1214
Query: 642 a-ggtctattcgt-ttgattcagtggcaaaccttttttcgagacgttaaacaagatctgg 699
| |||||| |||| |||||||| ||||||||| ||||||||||||| ||||||||||||
Sbjct: 1213 agggtcta-tcgtattgattcaatggcaaacc-cttttcgagacgttcaacaagatctgg 1156
Query: 700 gtt 702
|||
Sbjct: 1155 gtt 1153
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9377
Number of Sequences: 1807
Number of extensions: 9377
Number of successful extensions: 85
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)