BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZB11FM1.SCF screened BAC_end
(901 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1570 1505 0.0
>3x_Contig1570
Length = 12233
Score = 1505 bits (759), Expect = 0.0
Identities = 800/811 (98%), Gaps = 2/811 (0%)
Strand = Plus / Minus
Query: 91 tgcaatcagcaacacctctaccgaaaagattctcgccatcaaacgtaccattgtatggtg 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8282 tgcaatcagcaacacctctaccgaaaagattctcgccatcaaacgtaccattgtatggtg 8223
Query: 151 gatacccccattgatctatggtttctgcattgacaggcacgacatcttgatgtcctgcta 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8222 gatacccccattgatctatggtttctgcattgacaggcacgacatcttgatgtcctgcta 8163
Query: 211 aaactaaaggctttaaactagcatatttcccctcccaaacgtaaaccaaattgtatttgt 270
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 8162 aaactaaaggctttaaactagcatctttcccctcccaaacgtaaaccaaattgtatttgt 8103
Query: 271 atttagtttcatcaagtttcaaagtcttatgcactgcagggtacgtcttacggaaatagt 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8102 atttagtttcatcaagtttcaaagtcttatgcactgcagggtacgtcttacggaaatagt 8043
Query: 331 catgtaacactgtgaagttttcatataccttaggaaattcaataggatctagatgagaat 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8042 catgtaacactgtgaagttttcatataccttaggaaattcaataggatctagatgagaat 7983
Query: 391 catacgattcagtaggaattctaacggatcctaatagtttctcaacggcatcgctacgat 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7982 catacgattcagtaggaattctaacggatcctaatagtttctcaacggcatcgctacgat 7923
Query: 451 attcgacatcgtgtgtgatcatttccaaggtcgagttatcattgatgtatgaaggcggtt 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7922 attcgacatcgtgtgtgatcatttccaaggtcgagttatcattgatgtatgaaggcggtt 7863
Query: 511 tcaaatttggtgcgtttggacacaatggttcacttgcagtctgattatctttcaaggtcc 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7862 tcaaatttggtgcgtttggacacaatggttcacttgcagtctgattatctttcaaggtcc 7803
Query: 571 ttgaccatctggataaatgcaaaccacataaaaacaacaaaactgtcaccacagccaagg 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7802 ttgaccatctggataaatgcaaaccacataaaaacaacaaaactgtcaccacagccaagg 7743
Query: 631 cctttagccttaaattagaaatatgaacgtcactattctccttaatacccattgtttact 690
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 7742 cctttagccttaaattagaaatatgaacgtcacgattctccttaatacccattgtttact 7683
Query: 691 cgataaaaaccaaacgctctttctacgataccgtttacaacgtcaaagcttcaaattctg 750
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7682 cgataaaaaccagtcgctctttctacgataccgtttacaacgtcaaagcttcaaattctg 7623
Query: 751 agtcttctctctctttgctgtaataatagcacaaacctcattaaggatatttaatttata 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7622 agtcttctctctctttgctgtaataatagcacaaacctcattaaggatatttaatttata 7563
Query: 811 ctagctgtccataaatatatctggtcgaaactcaca-gttctgctttgccaaaa-ggtta 868
|||||||| ||||||||||||||||||||||||| | ||||||| ||||||||| |||||
Sbjct: 7562 ctagctgtacataaatatatctggtcgaaactcaaaggttctgcattgccaaaagggtta 7503
Query: 869 tattaaagaagacgtggggtataatataata 899
||| ||||| |||||||||||||||||||||
Sbjct: 7502 tataaaagaggacgtggggtataatataata 7472
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5995
Number of Sequences: 1807
Number of extensions: 5995
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 901
length of database: 10,358,551
effective HSP length: 16
effective length of query: 885
effective length of database: 10,329,639
effective search space: 9141730515
effective search space used: 9141730515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)