BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZB11RM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1335 1431 0.0
>3x_Contig1335
Length = 8696
Score = 1431 bits (722), Expect = 0.0
Identities = 832/861 (96%), Gaps = 6/861 (0%)
Strand = Plus / Minus
Query: 49 gcttgcatattaatcagatttttttacttaaaacactaagatactatgtcaattcctagt 108
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 6000 gcttgcatattaatcagattttctcacttaaaacactaagatactatgtcaattcctagt 5941
Query: 109 aaatcctactaatttgcttctgaactttattgatctcgcgtaaacacttacctgaggaca 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5940 aaatcctactaatttgcttctgaactttattgatctcgcgtaaacacttacctgaggaca 5881
Query: 169 tatgcttcgatcattagacagatctctttgtattctgtacttttccaaggttttttcacg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 5880 tatgcttcgatcattagacagatctctttgtattctgtacttttccaaggtttcgacacg 5821
Query: 229 atttttttcgattctaaatagagaatttccgaaaacggtagataaacgtgactatcatgt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5820 atttttttcgattctaaatagagaatttccgaaaacggtagataaacgtgactatcatgt 5761
Query: 289 ggatagaaatggggaaggtgacaacacttggattcgggattcggtgaggaaccacaatat 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5760 ggatagaaatggggaaggtgacaacacttggattcgggattcggtgaggaaccacaatat 5701
Query: 349 acctagaaaagtatcctagattcattgaacaacaggtagttcttaatgattaaattacgg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5700 acctagaaaagtatcctagattcattgaacaacaggtagttcttaatgattaaattacgg 5641
Query: 409 tatacattttccaatgttcacgtgactcaaaactgtcatgtgaccgacacaaagaataca 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5640 tatacattttccaatgttcacgtgactcaaaactgtcatgtgaccgacacaaagaataca 5581
Query: 469 ctacttagatttcccaattaggagaaacgtaaacattgaaatagtgatataaagtcatag 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5580 ctacttagatttcccaattaggagaaacgtaaacattgaaatagtgatataaagtcatag 5521
Query: 529 aaatgcaatgctacatgtgtagaaaccacattacagtgttcatcacgacaacctataaaa 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5520 aaatgcaatgctacatgtgtagaaaccacattacagtgttcatcacgacaacctataaaa 5461
Query: 589 ctgctattcaggagccaggtactaaataagatcaaacagatacaagcctagttcaaagta 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5460 ctgctattcaggagccaggtactaaataagatcaaacagatacaagcctagttcaaagta 5401
Query: 649 gctcanagaataatgactgcccgccaatttcaaccattacatcagaaacaggatttctca 708
||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 5400 gctcaaagaataatgactgccggccaatttcaaccattacatcagaaacagga-ttctca 5342
Query: 709 tactgcgagtacaagtttgcacaaagccattttttaagaaaccattaccacaccaacttt 768
||||||||||||||||||||||| |||| | ||||||||||||| ||||||||| | ||
Sbjct: 5341 aactgcgagtacaagtttgcacaaggcca-tgtttaagaaaccatcaccacaccagc-tt 5284
Query: 769 tcaaaaatgaaaaacaagttttgcttttcctaccgatgatttgttctctccatgttccca 828
||| ||||||| |||||| ||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 5283 tcagaaatgaagaacaag-tttgcttctcctaccgatgatttgctctctccatgttccca 5225
Query: 829 gaatttgaacgatcacagatcgaatgttgttccaggcaaagaccaattctacccatttga 888
||| |||||||||||||||||||| ||||||||||||||||| |||| ||||| | ||||
Sbjct: 5224 gaagttgaacgatcacagatcgaa-gttgttccaggcaaagagcaatcctaccaagttga 5166
Query: 889 attttccagtcaaaacaatta 909
| ||||||||| || ||||||
Sbjct: 5165 a-tttccagtcgaagcaatta 5146
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7015
Number of Sequences: 1807
Number of extensions: 7015
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)