BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZB12FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1602 1588 0.0
>3x_Contig1602
Length = 12694
Score = 1588 bits (801), Expect = 0.0
Identities = 840/850 (98%), Gaps = 3/850 (0%)
Strand = Plus / Minus
Query: 88 tcctgcccttgtttagggttccatgtttctgttacatcattcctcatgtgatgttagaat 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2075 tcctgcccttgtttagggttccatgtttctgttacatcattcctcatgtgatgttagaat 2016
Query: 148 aaatcatttcaaattctaatttcaacctatatataattttaagggaagaaaatcaaaaaa 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2015 aaatcatttcaaattctaatttcaacctatatataattttaagggaagaaaatcaaaaaa 1956
Query: 208 aaaaaaaaaatgctatagttaggaatgagcatatgctagcttccttgggtcaaatggatt 267
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1955 aaaaaaaaa-tgctatagttaggaatgagcatatgctagcttccttgggtcaaatggatt 1897
Query: 268 tttgggcctcgaaaaacgagaggaaaaagtagacttgctgacataagggacaaactaaaa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1896 tttgggcctcgaaaaacgagaggaaaaagtagacttgctgacataagggacaaactaaaa 1837
Query: 328 gaggacagacaccaaaagggaagagagacaaaaaaaataaagaaatcacgtgatatatat 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1836 gaggacagacaccaaaagggaagagagacaaaaaaaataaagaaatcacgtgatatatat 1777
Query: 388 ttctctcactcctcccattctctcccatactgtctcgctcatcttactttacctatttca 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1776 ttctctcactcctcccattctctcccatactgtctcgctcatcttactttacctatttca 1717
Query: 448 tggaaaacgtaaacaaaatcagaattcgtttttgatatttagcattacgacaatgataaa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1716 tggaaaacgtaaacaaaatcagaattcgtttttgatatttagcattacgacaatgataaa 1657
Query: 508 gcgggagctttagtgttgagatcaattgaaggcatagctattggcacagcaggtcctttg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1656 gcgggagctttagtgttgagatcaattgaaggcatagctattggcacagcaggtcctttg 1597
Query: 568 aagagagttttattaggtaaagttttgatttacaaatctagaaactgttttagcaggata 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1596 aagagagttttattaggtaaagttttgatttacaaatctagaaactgttttagcaggata 1537
Query: 628 tcccagttgttcatcagagtttacggtggcagtgtgttcaaaatattactcaaaaaatgt 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1536 tcccagttgttcatcagagtttacggtggcagtgtgttcaaaatattactcaaaaaatgt 1477
Query: 688 catttctacagaacttgtatgttgtaagattgttatttgtgtcctctttacaaagt-agt 746
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1476 catttctacagaacttgtatgttgtaagattgttatttgtgtcctctttacaaagtaagt 1417
Query: 747 gagagcggccttgatagttttcaattattttactaacgttgaggtttctgcgatttttac 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1416 gagagcggccttgatagttttcaattattttactaacgttgaggtttctgcgatttttac 1357
Query: 807 tcgcttgggaactttccatatgttntcagtcatttgagtccagttcagacgattaaatc- 865
|||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||
Sbjct: 1356 tcgcttgggaactttccatatgttttcagtcatttgagtccaggtcagacgataaaatca 1297
Query: 866 actcgaggattcanatggnatacagccaaaaatacgaattaagatgggaatggcaatggt 925
||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1296 actcgaggattcaaatggaatacagccaaaaatacgaataaagatgggaatggcaatggt 1237
Query: 926 tatacaaatg 935
|||||||||
Sbjct: 1236 aatacaaatg 1227
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,974
Number of Sequences: 1807
Number of extensions: 17974
Number of successful extensions: 2576
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)