BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZB12RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1600 1378 0.0
3x_Contig1728 242 1e-63
>3x_Contig1600
Length = 9359
Score = 1378 bits (695), Expect = 0.0
Identities = 833/869 (95%), Gaps = 8/869 (0%)
Strand = Plus / Plus
Query: 41 gctttacaatgaagagggttcctttgtcttcaatgacgcagaagccttgcaagaatttgc 100
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 2695 gctttacaatgaagagggttcctgggtcttcaatgacgcagaagccttggaagaatttgc 2754
Query: 101 gattgactggttctcgaagaatgagtaatgaacccccaaaaacgctactggcaagattgt 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2755 gattgactggttctcgaagaatgagtaatgaacccccaaaaacgctactggcaagattgt 2814
Query: 161 aaaattactttaaaaacgaacacataataggggaaagaaacagactgcttataaa-tgna 219
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 2815 aaaattacgttaaaaacgaacacataataggggaaagaaacagactgcttataaaatgta 2874
Query: 220 ttgaattccacgtattacctttaataaattcttttgaaaaacctgacgatatatacagag 279
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2875 gtgaattccacgtattacctttaataaattcttttgaaaaacctgacgatatatacagag 2934
Query: 280 tacttaaagacgatatgtatatagctcaaagtatttgaatcaataactgacgacatgcaa 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2935 tacttaaagacgatatgtatatagctcaaagtatttgaatcaataactgacgacatgcaa 2994
Query: 340 atacataatatcgtaaaacaccaaatatatgcaccttcataacacccacacgtctcacac 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2995 atacataatatcgtaaaacaccaaatatatgcaccttcataacacccacacgtctcacac 3054
Query: 400 aacatattgggactgttttctttacttctgttttgaattacgacgcaaattaaatttccc 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3055 aacatattgggactgttttctttacttctgttttgaattacgacgcaaattaaatttccc 3114
Query: 460 ttttgaaaaaattttcaaatgaaaaaaagctgtccagactctggtgatatataatcagaa 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3115 ttttgaaaaaattttcaaatgaaaaaaagctgtccagactctggtgatatataatcagaa 3174
Query: 520 tacggaaagccatatttttcaacttacaactttcacaagagtagtacggtactgttcaat 579
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 3175 tacggaaagccatatttttcaacttacaactttcacagcagtagtacggtactgttaaat 3234
Query: 580 tctactgtataactttgctcaaccaaccaaagcaaacgacacataaccaaaaatgaagta 639
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3235 tataatgtataactttgctcaaccaaccaaagcaaacgacacataaccaaaaatgaagta 3294
Query: 640 cattcaaactgaccaagtcctagatgtcccagaaggtgttaccgttcaaatcagatccag 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3295 cattcaaactgaccaagtcctagatgtcccagaaggtgttaccgttcaaatcagatccag 3354
Query: 700 aataatcaaggttactggaccaaggagtgtttttgactaaaaacttgaagcacattgatg 759
|||||||||||||||||||||||| ||| | |||||||| |||||||||||||| ||||
Sbjct: 3355 aataatcaaggttactggaccaagaggtg-tcttgactaagaacttgaagcacatcgatg 3413
Query: 760 ttaccttcaccaagggctttaacagacaaattaaaatcaccgtccacaacggttgacaga 819
||||||||||||||| || ||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 3414 ttaccttcaccaaggtctctaacagacaaattaagatcaccgtccacaacgg-tgacaga 3472
Query: 820 aaac-cgttggctgttttagaaaactggtaagatctttgatttctaacttgatcaatggt 878
|| | |||| |||| ||| || ||||| |||| |||||||||||||||||||||| |||
Sbjct: 3473 aagcacgtt-gctgcttt-gagaactgttaag-tctttgatttctaacttgatcactgg- 3528
Query: 879 tgccaccaatggntacaagtccaagttga 907
|| |||||| || ||||||| ||||||||
Sbjct: 3529 tgtcaccaagggttacaagtacaagttga 3557
>3x_Contig1728
Length = 20685
Score = 242 bits (122), Expect = 1e-63
Identities = 175/190 (92%), Gaps = 2/190 (1%)
Strand = Plus / Plus
Query: 632 atgaagtacattcaaactgaccaagtcctagatgtcccagaaggtgttaccgttcaaatc 691
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 19833 atgaagtacattcaaactgaccaagtcctagatgtcccagaaggtgttaccgtccaaatc 19892
Query: 692 agatccagaataatcaaggttactggaccaaggagtgtttttgactaaaaacttgaagca 751
|||||||||| |||||||||||||| ||||| ||| |||||||||| |||||||||||
Sbjct: 19893 agatccagaaacatcaaggttactggtccaagaggtg-ttttgactaagaacttgaagca 19951
Query: 752 cattgatgttaccttcaccaagggctttaacagacaaattaaaatcaccgtccacaacgg 811
||| ||||||||||||||||||| || |||||||||||| || |||||||| ||||||||
Sbjct: 19952 catcgatgttaccttcaccaaggtctctaacagacaaatcaagatcaccgttcacaacgg 20011
Query: 812 ttgacagaaa 821
|||||||||
Sbjct: 20012 -tgacagaaa 20020
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8188
Number of Sequences: 1807
Number of extensions: 8188
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 2
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)