BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZC01FM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1296 1261 0.0
>3x_Contig1296
Length = 7334
Score = 1261 bits (636), Expect = 0.0
Identities = 754/782 (96%), Gaps = 10/782 (1%)
Strand = Plus / Minus
Query: 86 atcactgatcttggaggtccaagcgttgacacatcaaactctgtacgtaagaaccaagaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2362 atcactgatcttggaggtccaagcgttgacacatcaaactctgtacgtaagaaccaagaa 2303
Query: 146 aagaccagcatccccttatattttgggtaggcatagttaacaatttgttacactcatagc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2302 aagaccagcatccccttatattttgggtaggcatagttaacaatttgttacactcatagc 2243
Query: 206 acatacgtttcaatcacagaaaacctagtttaatctccacacaaaaatacctagcaaaca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2242 acatacgtttcaatcacagaaaacctagtttaatctccacacaaaaatacctagcaaaca 2183
Query: 266 ttcacagagacatgaatggttttaattgtaccacaactcggaagtgtactggcaacacaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2182 ttcacagagacatgaatggttttaattgtaccacaactcggaagtgtactggcaacacaa 2123
Query: 326 atatataactcagacgtacgttctttcaaatttaaatatttatcctgtcttattctttag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2122 atatataactcagacgtacgttctttcaaatttaaatatttatcctgtcttattctttag 2063
Query: 386 ttggacagaatgagaaataattgtggaacggggcagaagagtgtgtggtatgaatttgtt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2062 ttggacagaatgagaaataattgtggaacggggcagaagagtgtgtggtatgaatttgtt 2003
Query: 446 tcaaaaaactcgataccatccgagaatattatttactattcggacctcaacagctcaggt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2002 tcaaaaaactcgataccatccgagaatattatttactattcggacctcaacagctcaggt 1943
Query: 506 tcggagttccggcgtccacctggtgcagtaactgtctgtgatactcaaaactgagaaaat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1942 tcggagttccggcgtccacctggtgcagtaactgtctgtgatactcaaaactgagaaaat 1883
Query: 566 accgagaaacgaacatcgaggttcgtaggaaaagcatcgatcggcacatgaaaaacatgc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1882 accgagaaacgaacatcgaggttcgtaggaaaagcatcgatcggcacatgaaaaacatgc 1823
Query: 626 ttttgcgtattggaaatcgcagcttgacattgtggaaaccttatatctatatcggaagaa 685
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 1822 ttttgcgtattggaaatcggagcttgacattgtggaaacctagtatctatatcggaagaa 1763
Query: 686 catccaggttttattttacaccctgttttgaataccctttgttccactgtgaattagact 745
|||||| |||||||||||| |||| |||||||| |||||||||||||||| ||||||||
Sbjct: 1762 aatccagtttttattttaca-cctggtttgaata-cctttgttccactgtg-attagact 1706
Query: 746 tttcaccctgcgacggtaatgccatcaccggtttttccagttcacgttatttgaagaggt 805
||||| ||| |||| ||||||||||||||| | ||||||| ||||| || ||||||||||
Sbjct: 1705 tttca-cctccgac-gtaatgccatcaccgctatttccag-tcacg-taattgaagaggt 1650
Query: 806 cctaaggaaaattccacggcttttccttttgggttttcggtntcacagctggaatcacaa 865
|||| | | |||||||| ||||||||||| |||||| || ||||||||| |||||||
Sbjct: 1649 actaatg-agattccacgtcttttcctttt--gttttctgtttcacagctgagatcacaa 1593
Query: 866 tg 867
||
Sbjct: 1592 tg 1591
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5785
Number of Sequences: 1807
Number of extensions: 5785
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)