BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZC02FM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig608 1330 0.0
>3x_Contig608
Length = 2255
Score = 1330 bits (671), Expect = 0.0
Identities = 824/857 (96%), Gaps = 16/857 (1%)
Strand = Plus / Minus
Query: 87 taggtgctattgttcaacctacaggttctttgaaggatgctaccaagactttgcaatcac 146
|||| ||||||||||| ||||| ||| |||||||||||||||||||||||| ||||||||
Sbjct: 2217 taggggctattgttca-cctacgggt-ctttgaaggatgctaccaagactt-gcaatcac 2161
Query: 147 aattttacactcaatctgctgctttgccggctttgattcacattttgcaaaacagttcaa 206
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2160 aattttacactcaatctgctgctttgccggctttgattcacattt-gcaaaacagttcaa 2102
Query: 207 atgatggtatcaatcaactagccggtgttgaagctagaaagcaagtttctaagcactggg 266
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2101 atgatggtatcaagcaactagccggtgttgaagctagaaagcaagtttctaagcactggg 2042
Query: 267 gttctcttgatgctgctactcaaacaagcgtaaagcaatccttgttgaactctgctttta 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2041 gttctcttgatgctgctactcaaacaagcgtaaagcaatccttgttgaactctgctttta 1982
Query: 327 acgaaggaaaagatgctgttcgccatgctaatgcccgtgtcattgcctccattggatccg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1981 acgaaggaaaagatgctgttcgccatgctaatgcccgtgtcattgcctccattggatccg 1922
Query: 387 aagaattagacgagaagaaatggccagagttgattccaaaccttctacaagctgcttgtg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1921 aagaattagacgagaagaaatggccagagttgattccaaaccttctacaagctgcttgtg 1862
Query: 447 atagtaacccaaaaattagagaaactgctattttcattatcttgtcccttttggaatcct 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1861 atagtaacccaaaaattagagaaactgctattttcattatcttgtcccttttggaatcct 1802
Query: 507 ttaatgctaacttggctttacacatcgatgatttcttgaacttgtttgctcaaactatta 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1801 ttaatgctaacttggctttacacatcgatgatttcttgaacttgtttgctcaaactatta 1742
Query: 567 acgattctgcatcattggagacaagatctttgtctgcgcaagccttgagttacgtctcct 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1741 acgattctgcatcattggagacaagatctttgtctgcgcaagccttgagttacgtctcct 1682
Query: 627 ctttaatcgaagaagaaggtgaaatcaatccacaatatgccgctaagtttgcttctttga 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1681 ctttaatcgaagaagaaggtgaaatcaatccacaatatgccgctaagtttgcttctttga 1622
Query: 687 ttccttccgtcgtccaagttctggatgccaccatcagagaaggtgatactactaacacaa 746
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1621 ttccttccgtcgtccaggttctggatgccaccatcagagaaggtgatactactaacacaa 1562
Query: 747 agctaatcctcaactggtttaaatgacttttttggtaattggactctcaattaactgggt 806
|||||||| |||||| |||||||||||||||| || |||||||||||||||||||||
Sbjct: 1561 agctaatcttcaact-gtttaaatgacttttt--gttattggactctcaattaactggta 1505
Query: 807 acacaattgcttgatttggtcaaattgcctttaacaattgccgtcaatttcgaatgtcga 866
|||||||||| |||||||||||||||| ||||| |||||||||||||| || |||||||
Sbjct: 1504 acacaattgc-tgatttggtcaaattggctttacaaattgccgtcaattccg-atgtcga 1447
Query: 867 tgtaagat-ttaaagtggtttgcagtacaattttgtacccttctgcttttattttacgga 925
|| ||||| ||| ||| |||||||||||||||| || ||||||| |||| ||||| |
Sbjct: 1446 tg-aagatattagagt-gtttgcagtacaatttgtta--cttctgc-tttagtttacag- 1393
Query: 926 aaaatctaaaataaacc 942
|||||||||||||||||
Sbjct: 1392 aaaatctaaaataaacc 1376
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7171
Number of Sequences: 1807
Number of extensions: 7171
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)