BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZC02RM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig947 1247 0.0
>3x_Contig947
Length = 3468
Score = 1247 bits (629), Expect = 0.0
Identities = 694/709 (97%), Gaps = 5/709 (0%)
Strand = Plus / Minus
Query: 45 ctttacaagaatcttatgaattatttaagatgactccattactatataaggatggttctg 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1746 ctttacaagaatcttatgaattatttaagatgactccattactatataaggatggttctg 1687
Query: 105 aatgaaagtttggcttgtcctgaattatctttttcttctcctctcgttccgtatcatgtt 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1686 aatgaaagtttggcttgtcctgaattatctttttcttctcctctcgttccgtatcatgtt 1627
Query: 165 ctcaacggctcgtgtgttgatgaacagttccaacaaaaattttcgaactgattgtttgaa 224
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1626 ctcaacggctcgtgtgttgatgaacagttccaacaaaaattttcgaactgagggtttgaa 1567
Query: 225 tcggtactctcccaataattcataaacttgttcaaacatttctgggctttggaatctact 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1566 tcggtactctcccaataattcataaacttgttcaaacatttctgggctttggaatctact 1507
Query: 285 aggcccatacttggactggagagcagttatctctttgatcgcaccattcagaaggatatt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1506 aggcccatacttggactggagagcagttatctctttgatcgcaccattcagaaggatatt 1447
Query: 345 gttgcccatatcgcttactatccttaggatcctattgttgatcttgtcatcttcaaacac 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1446 gttgcccatatcgcttactatccttaggatcctattgttgatcttgtcatcttcaaacac 1387
Query: 405 atctggcagtttcgactcatttgtttgggatatctctcggatcgctcgttccaattcttg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1386 atctggcagtttcgactcatttgtttgggatatctctcggatcgctcgttccaattcttg 1327
Query: 465 tttgtcctcttcctgctggtcgggattcacagacgtctcggatctttcccattccaataa 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1326 tttgtcctcttcctgctggtcgggattcacagacgtctcggatctttcccattccaataa 1267
Query: 525 gttgtctaaagggatctcatggtccccaactataatgttcgaattcagttcattgttaca 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1266 gttgtctaaagggatctcatggtccccaactataatgttcgaattcagttcattgttaca 1207
Query: 585 tatagacgccgcgttctgattgtgttcattcacttcatcccattcaatctgaatgtctcc 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1206 tatagacgccgcgttctgattgtgttcattcacttcatcccattcaatctgaatgtctcc 1147
Query: 645 tggtggtattttgattagcccaaggtcagacccatgcaacaatgttttcggcattttttt 704
||||||||||||||| ||||||||||||||| ||||||||||| | |||||| ||||||
Sbjct: 1146 tggtggtattttgataggcccaaggtcagaccaatgcaacaatg-tatcggca-tttttt 1089
Query: 705 gggacccattcacccatttggcttaccctcgagtgtcccattattgatt 753
||||| ||| || ||| ||||| || |||||||||| ||||||||||||
Sbjct: 1088 gggacacataca-ccaattggcata-cctcgagtgt-ccattattgatt 1043
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6698
Number of Sequences: 1807
Number of extensions: 6698
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)