BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZC03FM1.SCF screened BAC_end
(897 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1763 1564 0.0
>3x_Contig1763
Length = 22654
Score = 1564 bits (789), Expect = 0.0
Identities = 810/813 (99%), Gaps = 3/813 (0%)
Strand = Plus / Minus
Query: 86 tcgccattggcagaagctggtgctaaattgatagtcgatttaccatcgcagaagatcatg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15287 tcgccattggcagaagctggtgctaaattgatagtcgatttaccatcgcagaagatcatg 15228
Query: 146 gatgctgaaggtaatgttcttgtggatcatttcgatgttgagcctttcagaaaacactgt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15227 gatgctgaaggtaatgttcttgtggatcatttcgatgttgagcctttcagaaaacactgt 15168
Query: 206 ttggttaacggtcttgatgatattggtatcacaatgcagaaagaagagtacattgctaag 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15167 ttggttaacggtcttgatgatattggtatcacaatgcagaaagaagagtacattgctaag 15108
Query: 266 tatgaagccatgagaagagacaggttctctttcttagaaggtggttccaaactaataaaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15107 tatgaagccatgagaagagacaggttctctttcttagaaggtggttccaaactaataaaa 15048
Query: 326 cctatcaagggtactaagaagagtccatttggtaacagggctcaagagtggtaatcctgc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15047 cctatcaagggtactaagaagagtccatttggtaacagggctcaagagtggtaatcctgc 14988
Query: 386 atcaaattaaattgattaacctatcacattatttatcgtacatcaatttactattgaacc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14987 atcaaattaaattgattaacctatcacattatttatcgtacatcaatttactattgaacc 14928
Query: 446 attatttatttattacatactttgcctagtatttaagtcacattatttcaagtcataacc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14927 attatttatttattacatactttgcctagtatttaagtcacattatttcaagtcataacc 14868
Query: 506 gtcatgaagtcagttgagattgattaaatacagttcttatgatctaaattacaaattatt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14867 gtcatgaagtcagttgagattgattaaatacagttcttatgatctaaattacaaattatt 14808
Query: 566 actccaatcaagactgaaaactgggaatcagaatccaaacggattgctggatgacgcatt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14807 actccaatcaagactgaaaactgggaatcagaatccaaacggattgctggatgacgcatt 14748
Query: 626 aaagatatttgcttgtctttgttgctgagcttgtggaccgttaccaaaaccgaatccagt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14747 aaagatatttgcttgtctttgttgctgagcttgtggaccgttaccaaaaccgaatccagt 14688
Query: 686 tggctgattctgcagtggttgctgggacaaattcatattctggaaggaatttgttacttg 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14687 tggctgattctgcagtggttgctgggacaaattcatattctggaaggaatttgttacttg 14628
Query: 746 attgacacctccttggttattgaatgatgtttgaggtgctgtattcatacctccggttct 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14627 attgacacctccttggttattgaatgatgtttgaggtgctgtattcatacctccggttct 14568
Query: 806 ttgtaaattgataccaaatgacgattgtggctggaattccacca-tcgtagtttgagata 864
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 14567 ttgtaaattgataccaaatgacgattgtggctggaa-tccaccagtcgtagtttgagata 14509
Query: 865 aa-caaatgaagtttgtggtaggttgctattga 896
|| ||||||||||||||||||||||||||||||
Sbjct: 14508 aaccaaatgaagtttgtggtaggttgctattga 14476
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6686
Number of Sequences: 1807
Number of extensions: 6686
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 897
length of database: 10,358,551
effective HSP length: 16
effective length of query: 881
effective length of database: 10,329,639
effective search space: 9100411959
effective search space used: 9100411959
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)