BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZC05RM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1184 1372 0.0
>3x_Contig1184
Length = 5183
Score = 1372 bits (692), Expect = 0.0
Identities = 773/790 (97%), Gaps = 9/790 (1%)
Strand = Plus / Plus
Query: 44 gcttcaagaacgacggactcaattttgcatgtggtacttccaacggttactcttatatat 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3477 gcttcaagaacgacggactcaattttgcatgtggtacttccaacggttactcttatatat 3536
Query: 104 acgacttaagaacttctgaaccaagcatagtgaaggatcagggttatggttttgcagtga 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3537 acgacttaagaacttctgaaccaagcatagtgaaggatcagggttatggttttgcagtga 3596
Query: 164 acaagattatatggttagattcagtagaggattccaacaaaattttgacatgtgttttga 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 3597 acaagattatatggttagattcagtagaggattccaacaaaattttgacatgtgataaga 3656
Query: 224 gaattgccaagatatggaataagaacgatggtaaagcttatgcctcaatggaaccaagtg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3657 gaattgccaagatatggaataagaacgatggtaaagcttatgcctcaatggaaccaagtg 3716
Query: 284 ttgatatcaacgatattgagcatgttccaggcactggtatgtttttcacagccaatgaag 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3717 ttgatatcaacgatattgagcatgttccaggcactggtatgtttttcacagccaatgaag 3776
Query: 344 gtattccaatgcatacgtattatattccaaatctagggccagcgccaaggtggtgttcgt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3777 gtattccaatgcatacgtattatattccaaatctagggccagcgccaaggtggtgttcgt 3836
Query: 404 tcttggattcgatcacagaagaattggaagagaaaccaagcgattctgtttactcgaact 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3837 tcttggattcgatcacagaagaattggaagagaaaccaagcgattctgtttactcgaact 3896
Query: 464 acagattcatcacgaaggcagatgtgaagaaattgaatttgactcacttgattggctcca 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3897 acagattcatcacgaaggcagatgtgaagaaattgaatttgactcacttgattggctcca 3956
Query: 524 aggttttgagagcatacatgcacggtttcttcatcaatacagagttgtatgataaggtag 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3957 aggttttgagagcatacatgcacggtttcttcatcaatacagagttgtatgataaggtag 4016
Query: 584 cattgattgctaatccaaactcttaccgtgatgaaagagaaagagaaattagacgtcgga 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4017 cattgattgctaatccaaactcttaccgtgatgaaagagaaagagaaattagacgtcgga 4076
Query: 644 ttgaaaaggaaagagaatcaagaatcaagagtacaggtgctattactacatctaaggtca 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4077 ttgaaaaggaaagagaatcaagaatcaagagtacaggtgctattactacatctaaggtca 4136
Query: 704 aggtt-acaagaatgtt-gttgantagttgagcgaaaaacgtggtgattaaagttgctgg 761
||||| ||||| ||||| ||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 4137 aggttaacaag-atgttggttgataagttgagcgaaaaacgtggtga-taaagttgctgg 4194
Query: 762 taaagtatttggaagatgatcgttttcagggaaatgttttgaggatgatgccctttcaaa 821
||||||| |||||||||||||| ||||| ||||||| ||||| ||||||||| ||| ||
Sbjct: 4195 taaagta-ttggaagatgatcg-tttcaaggaaatg-tttgaagatgatgcc--ttccaa 4249
Query: 822 gtggatgaag 831
||||||||||
Sbjct: 4250 gtggatgaag 4259
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7963
Number of Sequences: 1807
Number of extensions: 7963
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)