BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZC06FM1.SCF screened BAC_end
(896 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig729 969 0.0
>3x_Contig729
Length = 2040
Score = 969 bits (489), Expect = 0.0
Identities = 508/512 (99%), Gaps = 2/512 (0%)
Strand = Plus / Plus
Query: 370 acacaccatagtggtacctcaagcagataggttcaaagaacctaaattccaaagaggtct 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acacaccatagtggtacctcaagcagataggttcaaagaacctaaattccaaagaggtct 60
Query: 430 acgtgcaccaacgatatcgacatcattgatggttactgtcttagactgtatatgcattga 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgtgcaccaacgatatcgacatcattgatggttactgtcttagactgtatatgcattga 120
Query: 490 aataagcaaagcatggtttggcaacgatccggtgaaacgtgaaatatttttcaatgagag 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aataagcaaagcatggtttggcaacgatccggtgaaacgtgaaatatttttcaatgagag 180
Query: 550 acacccaggcggaggtataggtaaaatcacttcttctacaaatctgacgcaattggtacg 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 acacccaggcggaggtataggtaaaatcacttcttctacaaatctgacgcaattggtacg 240
Query: 610 ggcaccaaccgattatcaaacaccacagtatcactcttacatggttaagaggaacgagac 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggcaccaaccgattatcaaacaccacagtatcactcttacatggttaagaggaacgagac 300
Query: 670 gttaacagagactcagtttctttcgctcctaataactttcgattacatacaattctcgcc 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gttaacagagactcagtttctttcgctcctaataactttcgattacatacaattctcgcc 360
Query: 730 taaaaacgtcagggtcccaacgtgtctcttacgtgaggaacacaagcgcgcagtccactc 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 taaaaacgtcagggtcccaacgtgtctcttacgtgaggaacacaagcgcgcagtccactc 420
Query: 790 angaactgttcctngaatggtttcgca-gtatttgtaaatagaaactacttttgtcgttt 848
| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 421 aggaactgttcct-gaatggtttcgcaggtatttgtaaatagaaactacttttgtcgttt 479
Query: 849 taccttgtttaataggtatacattttcttaaa 880
|||||||||||||||||||||| |||||||||
Sbjct: 480 taccttgtttaataggtatacaatttcttaaa 511
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4906
Number of Sequences: 1807
Number of extensions: 4906
Number of successful extensions: 19
Number of sequences better than 1.0e-20: 1
length of query: 896
length of database: 10,358,551
effective HSP length: 16
effective length of query: 880
effective length of database: 10,329,639
effective search space: 9090082320
effective search space used: 9090082320
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)