BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZC06RM1.SCF screened BAC_end
(1003 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1509 801 0.0
>3x_Contig1509
Length = 8584
Score = 801 bits (404), Expect = 0.0
Identities = 464/483 (96%), Gaps = 1/483 (0%)
Strand = Plus / Plus
Query: 67 tgttgacctctttggaagtgtaagaccatccaagaattgaaagctgaaggtcaaaccaag 126
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 6742 tgttgacctctttggaag-gtaagaccatccaagaattggttgctgaaggtcaaaccaag 6800
Query: 127 ttggcttctgtcccagctggtggtgcctctggtgctgctgctgcttctggtgctgctggc 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6801 ttggcttctgtcccagctggtggtgcctctggtgctgctgctgcttctggtgctgctggc 6860
Query: 187 gcttctgctgaagaagaaaaggaagaagaaaaggaagaagaaaaggtagaatcngtcgat 246
|||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||
Sbjct: 6861 gcttctgctgaagaagaaaaggaagaagaaaaggaagaagaaaaggaagaatctgacgat 6920
Query: 247 gacatgggtttcggtctattcgattaaaaaatcaaagctactcgttaactaaaccttctt 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6921 gacatgggtttcggtctattcgattaaaaaatcaaagctactcgttaactaaaccttctt 6980
Query: 307 ttatgtcattcccagtcgaaaattttcgatgcagatatttgtattctaacagttgtgaag 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6981 ttatgtcattcccagtcgaaaattttcgatgcagatatttgtattctaacagttgtgaag 7040
Query: 367 tgaaccgcattttaaagcttattcactcttccttaggagattgtcactaagttcaataat 426
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 7041 tgaaccgcattttaaagcttattcactcttcctttggagattgtcactaagttcaataat 7100
Query: 427 tatgtgtaatcatcgcttaatatggagaaataaaatatctatactttacttttttttcaa 486
||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 7101 tatgtgtaatcatcgtttaatatgtagaaataaaatatctatacttcacttttttttcaa 7160
Query: 487 gctcgctggtcgtcttcattctatattatctgtgatgtgcaacatctttttcaatgaaat 546
|||||||| | |||||||||| ||||||||| |||||||||| ||| |||||||||| |
Sbjct: 7161 gctcgctgtttgtcttcattcgatattatctttgatgtgcaatatcgatttcaatgaact 7220
Query: 547 aga 549
|||
Sbjct: 7221 aga 7223
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,791
Number of Sequences: 1807
Number of extensions: 11791
Number of successful extensions: 353
Number of sequences better than 1.0e-20: 1
length of query: 1003
length of database: 10,358,551
effective HSP length: 16
effective length of query: 987
effective length of database: 10,329,639
effective search space: 10195353693
effective search space used: 10195353693
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)