BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZC07FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1641 1576 0.0
>3x_Contig1641
Length = 13261
Score = 1576 bits (795), Expect = 0.0
Identities = 826/834 (99%), Gaps = 2/834 (0%)
Strand = Plus / Plus
Query: 90 atcaccagtaatttggtcaaggactgctttcggagcaggtcccaaacctaaaacagtagc 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3822 atcaccagtaatttggtcaaggactgctttcggagcaggtcccaaacctaaaacagtagc 3881
Query: 150 acttcccgctgcaatttgtgttctaccagcatcatgaacaacgtatgagttaactcctaa 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3882 acttcccgctgcaatttgtgttctaccagcatcatgaacaacgtatgagttaactcctaa 3941
Query: 210 tgcaatagccttagcgaagagctcatccattgtttccttatctggacattttaaagtaat 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3942 tgcaatagccttagcgaagagctcatccattgtttccttatctggacattttaaagtaat 4001
Query: 270 ctttgcttgacctcttgccaaccatctgtgagtcatctccggattatatgaagttctact 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4002 ctttgcttgacctcttgccaaccatctgtgagtcatctccggattatatgaagttctact 4061
Query: 330 tggatcacacgcaataagcctaaaacaggctaatgcagcatgacaacattgagcagcgat 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4062 tggatcacacgcaataagcctaaaacaggctaatgcagcatgacaacattgagcagcgat 4121
Query: 390 tttccctttagtcattcccaaatcttgcctgataaccaaggccatccttacttcaccagg 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4122 tttccctttagtcattcccaaatcttgcctgataaccaaggccatccttacttcaccagg 4181
Query: 450 aatgtcatttaggcatatggaatctactgcaatgccatcttcatcttcatcttcatcctc 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4182 aatgtcatttaggcatatggaatctactgcaatgccatcttcatcttcatcttcatcctc 4241
Query: 510 agattcgtcttcatcctcgtcctcatcaccatcgtcatgttcactggcatacgcttgctc 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4242 agattcgtcttcatcctcgtcctcatcaccatcgtcatgttcactggcatacgcttgctc 4301
Query: 570 atctcgctcagccttaatcttcgcttgtttcaacaattcttgtatctcatccttccttga 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4302 atctcgctcagccttaatcttcgcttgtttcaacaattcttgtatctcatccttccttga 4361
Query: 630 tggtgttatctgtccaagataatatccagttgtcagagataatgctgacagcgtgaacaa 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4362 tggtgttatctgtccaagataatatccagttgtcagagataatgctgacagcgtgaacaa 4421
Query: 690 cactgctaaattcaacgatgatggtgccatctggatagcagttatggtttgatgtagctg 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4422 cactgctaaattcaacgatgatggtgccatctggatagcagttatggtttgatgtagctg 4481
Query: 750 tagtgatagtgtcagtttcctctgcttt-atatgctctgccagtgatctccttgtcatca 808
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 4482 tagtgatagtgtcagtttcctctgctttaatatgctctgccagtgatctccttgtcatca 4541
Query: 809 cttggaatatatcggnttaatgtaaaattttcctaaagaaaaga-tatatgcacctgctg 867
||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 4542 cttggaatatatcggtttaatgtaaaattttcctaaagaaaagattatatgcaactgctg 4601
Query: 868 gattgaaacgtatgaagtaggacgtttgctggtactttaaaccaacagattcct 921
||| ||||||||||||||||||||| ||||||||||||| |||| |||||||||
Sbjct: 4602 gatagaaacgtatgaagtaggacgtctgctggtactttagaccaccagattcct 4655
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6382
Number of Sequences: 1807
Number of extensions: 6382
Number of successful extensions: 164
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)