BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZC07RM1.SCF screened BAC_end
(975 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1608 961 0.0
>3x_Contig1608
Length = 13037
Score = 961 bits (485), Expect = 0.0
Identities = 518/528 (98%), Gaps = 1/528 (0%)
Strand = Plus / Plus
Query: 66 ctttgaagcatttcgtacataggatcaatttctgattatnt-agctttcctttattttac 124
||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct: 6580 ctttgaagcatttcgtacataggatcaatttctgattttttcagctttcctttattttac 6639
Query: 125 tgcaaagagaagccttagaggtctgaagccaactttgacatttaggtcagatcaactaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6640 tgcaaagagaagccttagaggtctgaagccaactttgacatttaggtcagatcaactaaa 6699
Query: 185 gatagacctaatgcaatatatacaattgtaaggaatcaaaagcatttatgtttaatttgg 244
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 6700 gatagacctaatgcaatatatacaattgtaaggaatcaaaagcatttaggtttaatttgg 6759
Query: 245 tacagtgtaatggatgagcatcgatcaaggacaccaagtatagatagtaggaattatgct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6760 tacagtgtaatggatgagcatcgatcaaggacaccaagtatagatagtaggaattatgct 6819
Query: 305 attccagaagcggattacctcccggcaggcattgacatagatagaaacggtgtgtctgaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6820 attccagaagcggattacctcccggcaggcattgacatagatagaaacggtgtgtctgaa 6879
Query: 365 tcagatgattcttccgatgatgatgctcaaagttcactatttccaacagaatccagtggt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6880 tcagatgattcttccgatgatgatgctcaaagttcactatttccaacagaatccagtggt 6939
Query: 425 acgttgtggatgaaccaaatccaagatacgcctatgtttgactcaagtaaatttctattt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6940 acgttgtggatgaaccaaatccaagatacgcctatgtttgactcaagtaaatttctattt 6999
Query: 485 gagtcggtaaataatgcaataaacgatattgacttttcggaatcccttgcaatacaagca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7000 gagtcggtaaataatgcaataaacgatattgacttttcggaatcccttgcaatacaagca 7059
Query: 545 aagacatgtgtatttgataattccaagagccgggagttgaaaggcctt 592
||||||| || ||| |||||| ||||||||||||||||||||||||
Sbjct: 7060 aagacatctgcattgattaattcgaagagccgggagttgaaaggcctt 7107
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7642
Number of Sequences: 1807
Number of extensions: 7642
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 975
length of database: 10,358,551
effective HSP length: 16
effective length of query: 959
effective length of database: 10,329,639
effective search space: 9906123801
effective search space used: 9906123801
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)