BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZC08FM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1760 1376 0.0
>3x_Contig1760
Length = 27266
Score = 1376 bits (694), Expect = 0.0
Identities = 776/797 (97%), Gaps = 6/797 (0%)
Strand = Plus / Minus
Query: 88 attatctgatgctatgcttcgtgccctttataggttgattagaccacatcaacagaatcc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10133 attatctgatgctatgcttcgtgccctttataggttgattagaccacatcaacagaatcc 10074
Query: 148 tttcaagcaaatcagtcatgtggtggttattaaagtgtcattctttgctttgtttccttt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10073 tttcaagcaaatcagtcatgtggtggttattaaagtgtcattctttgctttgtttccttt 10014
Query: 208 gcatgtttccttataggtttcaacgccgtcaacagtgattgggcatcggtgttacaacat 267
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10013 gcatgtttccttaaaggtttcaacgccgtcaacagtgattgggcatcggtgttacaacat 9954
Query: 268 caagctggttaaagaaggacgataagggtgtcacaatgggttagtaagggttcatttatg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9953 caagctggttaaagaaggacgataagggtgtcacaatgggttagtaagggttcatttatg 9894
Query: 328 gctgtgcatggtttaatccatgctgggctatctatacataccgatagatatgagctttct 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9893 gctgtgcatggtttaatccatgctgggctatctatacataccgatagatatgagctttct 9834
Query: 388 cggggcggaatgatctttatgcccttcaatctgaacgattccgatcgattgatttccgag 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9833 cggggcggaatgatctttatgcccttcaatctgaacgattccgatcgattgatttccgag 9774
Query: 448 acatagtcttcaactgattgcaacgggttaacgaacaggtatggctcgatgatactccat 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9773 acatagtcttcaactgattgcaacgggttaacgaacaggtatggctcgatgatactccat 9714
Query: 508 aagttcagtgtcaagaggtccaatatgacgttgacaaaatttcttctggttattgggttg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9713 aagttcagtgtcaagaggtccaatatgacgttgacaaaatttcttctggttattgggttg 9654
Query: 568 tatgcagcctctaagagtgaattgattcgagttacaatttcagtccattccgcttgatcc 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9653 tatgcagcctctaagagtgaattgattcgagttacaatttcagtccattccgcttgatcc 9594
Query: 628 aaatagtttgataatgggctcactgacgtttcgccataccattggccttcaaactctcct 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9593 aaatagtttgataatgggctcactgacgtttcgccataccattggccttcaaactctcct 9534
Query: 688 gccggaacgaactccttttttgtgagtatctggtaaggcttctggttcaaaccca-gtaa 746
||||||||||||||| || ||||||||||||||||||||| |||||||| ||||| ||||
Sbjct: 9533 gccggaacgaactcc-ttgttgtgagtatctggtaaggctgctggttcagacccaggtaa 9475
Query: 747 ctgtgtgctgaattta-gaaattctgtggatgactcaaacctttttgggaattcgaacga 805
|||||||||||| ||| |||||||||||||||||||||||| || |||||||||||||||
Sbjct: 9474 ctgtgtgctgaaattaggaaattctgtggatgactcaaacc-ttctgggaattcgaacga 9416
Query: 806 ctctagtggttcttaaatcatcgctttttttaagtacgtatttggtttgggaaaatggtt 865
||||||||||||| || |||||||||| || | |||||||| || || ||||||||| |
Sbjct: 9415 ctctagtggttctaaattcatcgctttcttcaggtacgtatatg--tttggaaaatgggt 9358
Query: 866 gatgcatattggattct 882
|||||| ||||||||||
Sbjct: 9357 gatgcagattggattct 9341
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5563
Number of Sequences: 1807
Number of extensions: 5563
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)