BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZC08RM1.SCF screened BAC_end
(984 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig848 803 0.0
3x_Contig419 634 0.0
>3x_Contig848
Length = 3091
Score = 803 bits (405), Expect = 0.0
Identities = 436/445 (97%), Gaps = 1/445 (0%)
Strand = Plus / Minus
Query: 68 tcgaagaaggcagatgcactttggggatcaccaattgggaa-aaagcgatccagaattgg 126
||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||
Sbjct: 445 tcgaagaaggcagatgcacttggtttatcaccaattgggaacaaagcgatccagaattgg 386
Query: 127 gccatcaagatcaaaataatcaatacgaaaccgtatacggaaccccatacaccagttggt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gccatcaagatcaaaataatcaatacgaaaccgtatacggaaccccatacaccagttggt 326
Query: 187 gcggtgaaactgagttcagcagtggttctgttttgtgcggccaaagcttttttttctctg 246
|||||||||||||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct: 325 gcggtgaaactgagttcagcagtggttctgttttgtgcggccaaagctcttctaactctg 266
Query: 247 atgtgacaaagcatgataccaccccatgtaaacaaagaggacaaaccagacaacgccaat 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgtgacaaagcatgataccaccccatgtaaacaaagaggacaaaccagacaacgccaat 206
Query: 307 aaccagtcgaatacttcaccttcctttggagatgcagcaatgaaggataacaaaccaaag 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aaccagtcgaatacttcaccttcctttggagatgcagcaatgaaggataacaaaccaaag 146
Query: 367 acacaagtgacaataataccgaccaatggtctaccggttctgtcaatgtaaccaaaaatc 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 acacaagtgacaataataccgaccaatggtctaccggttctgtcaatgtaaccaaaaatc 86
Query: 427 tttggtaaagaaccttggttagccaatgcagccatggatcttgagcaagcaaaaacagca 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 tttggtaaagaaccttggttagccaatgcagccatggatcttgagcaagcaaaaacagca 26
Query: 487 gagttaccaacagatagaacagcaa 511
|||||||||||||||||||||||||
Sbjct: 25 gagttaccaacagatagaacagcaa 1
>3x_Contig419
Length = 1943
Score = 634 bits (320), Expect = 0.0
Identities = 413/440 (93%), Gaps = 3/440 (0%)
Strand = Plus / Plus
Query: 208 gtggttctgttttgtgcg-gccaaagcttttttttctctgatgtgacaaagcatgatacc 266
||||||||||||||||| ||||||||| || | ||||||||||||| |||| |||||
Sbjct: 1 gtggttctgttttgtgccagccaaagctcttctaactctgatgtgacatagcaaaatacc 60
Query: 267 accccatgtaaacaaagaggacaaaccagacaacgccaataaccagtcgaatacttcacc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 accccatgtaaacaaagaggacaaaccagacaacgccaataaccagtcgaatacttcacc 120
Query: 327 ttcctttggagatgcagcaatgaaggataacaaaccaaagacacaagt-gacaataatac 385
||||||||||||||||||||||||||||| |||||||||||| ||||| ||| | |||||
Sbjct: 121 ttcctttggagatgcagcaatgaaggatagcaaaccaaagacgcaagtcgaccacaatac 180
Query: 386 cgaccaatggtctaccggttctgtcaatgtaaccaaaaatctttggtaaagaaccttggt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cgaccaatggtctaccggttctgtcaatgtaaccaaaaatctttggtaaagaaccttggt 240
Query: 446 tagccaatgcagccatggatcttgagcaagcaaaaacagcagagttaccaacagatagaa 505
|||||||||||||||| |||||||| ||| |||| ||||| | ||||||||||||||||
Sbjct: 241 tagccaatgcagccattgatcttgaacaaccaaagacagcgcaattaccaacagatagaa 300
Query: 506 cagcaatcaagataacaacgttgatcacagaaggtaaacctttaataccggcattttgaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cagcaatcaagataacaacgttgatcacagaaggtaaacctttaataccggcattttgaa 360
Query: 566 tggaaataacgaatggggatgcatcagcttctacagaactttgtccattcaattctatca 625
||||||||||||||||||||||| |||| || ||||||||||||||| |||| |||||||
Sbjct: 361 tggaaataacgaatggggatgcagcagcatcgacagaactttgtccaatcaa-tctatca 419
Query: 626 ctggtgtatgggaccaatag 645
||||||||||| ||||||||
Sbjct: 420 ctggtgtatggaaccaatag 439
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8996
Number of Sequences: 1807
Number of extensions: 8996
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 2
length of query: 984
length of database: 10,358,551
effective HSP length: 16
effective length of query: 968
effective length of database: 10,329,639
effective search space: 9999090552
effective search space used: 9999090552
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)