BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZC09FM1.SCF screened BAC_end
(901 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1572 1522 0.0
>3x_Contig1572
Length = 12810
Score = 1522 bits (768), Expect = 0.0
Identities = 806/815 (98%), Gaps = 3/815 (0%)
Strand = Plus / Plus
Query: 86 actttacaagagttcaaggatatgtgtccatgttcagagaaagagtttgtatcgaaatgg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1945 actttacaagagttcaaggatatgtgtccatgttcagagaaagagtttgtatcgaaatgg 2004
Query: 146 ttcgaagtcggaggatcagtagttcaaggttttgcatgtttactatctgaacgatttatg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2005 ttcgaagtcggaggatcagtagttcaaggttttgcatgtttactatctgaacgatttatg 2064
Query: 206 ttgaaggcgttacacattatattgataagttgcatggcagaaaatctagacgttgattcg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2065 ttgaaggcgttacacattatattgataagttgcatggcagaaaatctagacgttgattcg 2124
Query: 266 ttgagtatagacaaagtagcagatgttttggcaaaggatgtcaagcaaggtgaacctaac 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2125 ttgagtatagacaaagtagcagatgttttggcaaaggatgtcaagcaaggtgaacctaac 2184
Query: 326 ttatacacacacgaaattgtcactacagtgataaataaatttggctttaaagttgaatcc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2185 ttatacacacacgaaattgtcactacagtgataaataaatttggctttaaagttgaatcc 2244
Query: 386 gcagaaacagaaccagatgatgttagattcaggatcaacatgtcactgattgcaagatgg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2245 gcagaaacagaaccagatgatgttagattcaggatcaacatgtcactgattgcaagatgg 2304
Query: 446 tatggtgtatctgcgttgaagaagtttgccgccaaggagcccatatcagaagatgagttc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2305 tatggtgtatctgcgttgaagaagtttgccgccaaggagcccatatcagaagatgagttc 2364
Query: 506 atgatccaatggaaaggacagttcccaccatacttccattgtgaccttgatatttgcatg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2365 atgatccaatggaaaggacagttcccaccatacttccattgtgaccttgatatttgcatg 2424
Query: 566 cttcggggatattttgttagaccattgacaaacaaaattagatacatgtccagaaccact 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2425 cttcggggatattttgttagaccattgacaaacaaaattagatacatgtccagaaccact 2484
Query: 626 ttgtcgctagacgccaaggaaagattcaaacaactgttccactggcaaagtacatgggaa 685
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2485 ttgtcgctaga-gccaaggaaagattcaaacaactgttccactggcaaagtacatgggaa 2543
Query: 686 caggctgatatggtaccatatatttcggatttaaataccaagaatttgaagatagacacc 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2544 caggctgatatggtaccatatatttcggatttaaataccaagaatttgaagatagacacc 2603
Query: 746 tttattataaagtatgccagacggaaaagagtcggtaacaaggttttcatcagtgccagg 805
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2604 tttattataaagtatgccagacggaaaagagtcggtaacaaggttatcatcagtgccagg 2663
Query: 806 taaatacaaagattatacaggatacgcgagaggaacgaag-attataanattagtta-ac 863
||||||||||||| |||||||||||||||||||||||||| || |||| |||||||| ||
Sbjct: 2664 taaatacaaagataatacaggatacgcgagaggaacgaagaataataaaattagttatac 2723
Query: 864 caggattctatcagggttattagtacttattttta 898
|| |||||||||||||||||||||||||||||||
Sbjct: 2724 aagaattctatcagggttattagtacttattttta 2758
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6172
Number of Sequences: 1807
Number of extensions: 6172
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 901
length of database: 10,358,551
effective HSP length: 16
effective length of query: 885
effective length of database: 10,329,639
effective search space: 9141730515
effective search space used: 9141730515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)