BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZC09RM1.SCF screened BAC_end
(901 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig975 1302 0.0
>3x_Contig975
Length = 5628
Score = 1302 bits (657), Expect = 0.0
Identities = 723/740 (97%), Gaps = 4/740 (0%)
Strand = Plus / Plus
Query: 164 aaagaaacacagaagctaaatgaaatggaaagagtttcgctgccattactagacactgca 223
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 150 aaagaatcacagaagctaaatgaaatgtaaagagtttcgctgccattactagacactgca 209
Query: 224 gcgtccaggtgcctacactaatgtctctcggcaaaagaagagaagcagtacttgaaatcg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gcgtccaggtgcctacactaatgtctctcggcaaaagaagagaagcagtacttgaaatcg 269
Query: 284 ggattataccaatgaagcaacggaagtaaactacaaaaaaaaatactatggttgcttaca 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ggattataccaatgaagcaacggaagtaaactacaaaaaaaaatactatggttgcttaca 329
Query: 344 tggaatgcagagtgttaatgctttctatttttttggccctatacttactcttaaatcaaa 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tggaatgcagagtgttaatgctttctatttttttggccctatacttactcttaaatcaaa 389
Query: 404 ctgcaaaatgctttggctgtactacaaattacatttgaatagtctcagtggtatgcgaca 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ctgcaaaatgctttggctgtactacaaattacatttgaatagtctcagtggtatgcgaca 449
Query: 464 gttttgaacgaagggagtcgccaacttcttacaataacagccttatttttgcaaatctga 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gttttgaacgaagggagtcgccaacttcttacaataacagccttatttttgcaaatctga 509
Query: 524 ctgatcatcattagggttttcaaagttgttgagggtatatagggataacaaaaagtagaa 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ctgatcatcattagggttttcaaagttgttgagggtatatagggataacaaaaagtagaa 569
Query: 584 agcatacttcgaaagattctctgaaagacgtcggaatgaagcaggaatggaataatagga 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 agcatacttcgaaagattctctgaaagacgtcggaatgaagcaggaatggaataatagga 629
Query: 644 att-aaaggcaccttcngcctctctactcacttgtactattcgctgctcggatatttgtt 702
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 attcaaaggcaccttcggcctctctactcacttgtactattcgctgctcggatatttgtt 689
Query: 703 caactttcgaaatgattcttgtatgtccgtttctgctgattggaagttgaacagggttag 762
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 690 caactttcgaaatgattcttgtatgtccgtttctgctgattgaaagttgaacagggttag 749
Query: 763 aacatcgcgcagtattttgccaatggtggcaatgtactgctcaaaaaaattgtgttattt 822
|||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||
Sbjct: 750 aacatcgcgcagtattttgccaatggtggcaatgtactgctcaaaaaattgttgtttatt 809
Query: 823 tcaatatttcccggacctgggccctttctgggaaatttctatgggcaccgtttttgccct 882
|| |||| ||||||||||| |||||||||||||||||||||| |||| ||||||||||||
Sbjct: 810 tctatatatcccggacctgcgccctttctgggaaatttctat-ggcaacgtttttgccct 868
Query: 883 ggtgttctaaa-taaaaaat 901
|||||||||| ||||||||
Sbjct: 869 -gtgttctaaagtaaaaaat 887
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7893
Number of Sequences: 1807
Number of extensions: 7893
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 901
length of database: 10,358,551
effective HSP length: 16
effective length of query: 885
effective length of database: 10,329,639
effective search space: 9141730515
effective search space used: 9141730515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)